Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq22 143 3e-29 seq3 114 1e-20 seq34 100 3e-16 seq23 91.5 2e-13 >seq22 Length=83673 Score = 143 bits (158), Expect = 3e-29 Identities = 374/563 (66%), Gaps = 13/563 (2%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || |||||||| || ||||| || ||| || |||| | |||| Sbjct 16291 AGGCTGAAGCTTCTTTCTGGACAACTGAAGAGGTTGATCTGGCCCAGGATATTCAGGACT 16350 Query 116715 GGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||| | | |||| ||| | || || | || || | || || || ||||| | Sbjct 16351 GGGAACTTAGGCTGAATGACGATGAACGTTACTTTATTTCACGAGTTCTAGCGTTTTTTG 16410 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 |||| || ||||| || || || ||||| |||| | ||| | || || Sbjct 16411 CCGCTAGTGACGGTATTGTGAATGAGAACTTGGTTTCCAGGTTCAGTACTGACGTTGGTA 16470 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 | | ||||| |||||| ||||| || ||||| ||||||||| | ||||| |||| Sbjct 16471 TCTCTGAGGCCAAGTGCTTTTACGGATTCCAGATTATGATGGAGAACATTCACTCTGAAA 16530 Query 116892 TGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 |||| || || ||||| ||||| | || ||| || ||| ||| Sbjct 16531 TGTACAGTCTGCTTATTGACACTTACGTCAAGGAAACTAAGGAATCCCAGTTCCTTTT-- 16588 Query 116949 TGAACGCCATCGAGACGATGCCGTGCG--TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 ||| ||||| ||||| || ||| ||| | |||||||| ||||||| || ||||| Sbjct 16589 TGAT-GCCATTTTCACGATTCC-TGCCATTCAGA-AGAAGGCCAAGTGGGCTCTTCGCTG 16645 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| | | | || || |||| ||||| || || || ||||| || || ||||| Sbjct 16646 GATTACTGACGAGGAAGCTAGTTTCGCTGAGCGACTAGTCGCATTCGCAGCTGTTGAGGG 16705 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 || ||||| || || || || || || || |||||||| || || ||||| ||||| Sbjct 16706 TGTTTTCTTCTCAGGATCCTTTGCTGCTATTTTCTGGCTCAAAAAGCGTGGCCTTATGCC 16765 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 || |||| ||||| |||||| | || || | ||||||||||| ||| ||| || || Sbjct 16766 GGGTTTGACCTTCAGTAACGAGTTGATTTCTCGTGACGAGGGTCTTCATACCGATTTCGC 16825 Query 117187 CTGTTTGCTGTTCAAGCATTTGG 117209 ||| | || | || ||||||| Sbjct 16826 TTGTCTCCTTTACAGCCATTTGG 16848 >seq3 Length=255871 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||| | || || || || || || || |||||| |||| || ||| || Sbjct 112582 AAAATGCAGATTTTCATCAAGACTCTAACAGGAAAGACTATCACCCTCGAGGTTGAATCC 112641 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | ||| |||||| || || || || || || | ||| Sbjct 112642 AATGACACCATTGAGGCCGTAAAGAGCAAAATTAGTGATAAGGAAGGTATTCCTCCTGAC 112701 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| || |||| ||| ||||||||||| || || | ||||||||| |||||| Sbjct 112702 CAACAACGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCTGACTAC 112761 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| ||| |||| || || Sbjct 112762 AACATCCAGAAAGAGTCCACTCTTCA 112787 >seq34 Length=648589 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||| |||| ||| | ||||| || || || ||| |||| || || | Sbjct 446546 AAAATGCAGATTTTCATAAAGACGTTGACGGGAAAGACTATTACCCTCGAGGTTGAGTCT 446487 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| || || |||||| || || || || | ||| Sbjct 446486 AATGACACCATCGAGGCTGTCAAAAGCAAGATCAGCGACAAGGAAGGTATTCCTCCTGAC 446427 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| ||| || |||||||| || || | |||||||| |||||| Sbjct 446426 CAGCAGCGTTTGATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTTTCTGACTAC 446367 Query 40867 AACATCCAGAAGGAGGCCAC 40886 ||||||||||||||| |||| Sbjct 446366 AACATCCAGAAGGAGTCCAC 446347 >seq23 Length=679897 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 |||||| || || || || | |||||||| || || |||| ||| ||||| ||||| || Sbjct 615010 CGACAAGGAAGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGA 614951 Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||| ||||| || ||| || ||||||||||||||| |||| |||||| | || | Sbjct 614950 GGACGGCCGCACTCTTTCCGAGTATAACATCCAGAAGGAGTCCACTCTGCATTTGGTTCT 614891 Query 40902 GCGCTTGAGGGGCGG 40916 || ||| | || || Sbjct 614890 CCGTTTGCGTGGTGG 614876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218691221040