Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq22 116 3e-21 >seq22 Length=83673 Score = 116 bits (128), Expect = 3e-21 Identities = 565/887 (64%), Gaps = 25/887 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || || ||| | ||| || |||||||| || || || | ||||||||||| Sbjct 17119 TTTTGGTAGTCTGAAACACGCTTCTCGAAGAAATTGGTCTTACCAGCCAATGAAATATTC 17060 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTA----TTTATCGCATCCCAATTCCAA 16059 ||||| ||||| |||||||| ||| | ||| || || | ||||| | | Sbjct 17059 TCCATGAAATCGAAAGGATTGGCG--ACATT-GTACACCTTGTTCTGA-CCCAAAGCTAC 17004 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 | | |||||| |||||||| || | |||||| |||||||| || ||||| || | Sbjct 17003 GAGCAGTCTATCAGCCACAAACTCGACATACTGGTTCATTAAGTCGGCATTCATACCGAG 16944 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 || | ||||| | || ||| | || | | | || |||| || |||||| | | Sbjct 16943 TAGACTGACAGGCAAAGCATCTCTGAAGTACTCCTGCTCAATATCGACTGCTTCAGTAAG 16884 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239 ||| | || ||| | | || ||| || || | | | | |||||| Sbjct 16883 AATACGTTCTATAACAAAAGGTGCTGGTCTGTTCTCCAAATGGCTGTAAAGGAGACAAGC 16824 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||||| ||| | || ||||| | | || |||||||| || || | ||| || Sbjct 16823 GAAATCGGTATGAAGACCCTCGTCACGAGAAATCAACTCGTTACTGAAGGTCAAACCCGG 16764 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || || ||||| | ||| || ||||| ||||| || || || ||||| | ||| Sbjct 16763 CATAAGGCCACGCTTTTTGAGCCAGAAAATAGCAGCAAAGGATCCTGAGAAGAAAACACC 16704 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct---at 16416 ||||| || || ||||| || | ||||||| || | ||| || || || Sbjct 16703 CTCAACAGCTGCGAATGCGACTAGTCGCTCAGCGAAA---CTAGCTTCCTCGTCAGTAAT 16647 Query 16417 ccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAA 16475 ||| |||||| || || || | | || ||| || | || |||| || Sbjct 16646 CCAGCGAAGAGCCCACTTGGCCTTCTTCTGAATGGCAGGA-ATCGTGAAAATGGCATCAA 16588 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | | | | ||| || | || | ||||| || || || | ||| ||||||| Sbjct 16587 AAAGGAACTGGGATTCCTTAGTTTCCTTGACGTAAGTGTCAATAAGCAGACTGTACATTT 16528 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || ||||| |||||||| ||||| || || |||||||| | || || || || Sbjct 16527 CAGAGTGAATGTTCTCCATCATAATCTGGAATCCGTAAAAGCACTTGGCCTCAGAGATAC 16468 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 || |||| ||||| | ||||| || || || || || || ||||| |||| Sbjct 16467 CAACGTCAGTACTGAACCTGGAAACCAAGTTCTCATTCACAATACCGTCACTAGCGGCAA 16408 Query 16656 AAAACGCAAGTATGTGTTTAATAA---AAtttttttCGTTA-TCTG--AAAGTTTTAACC 16709 ||||||| || | || ||||| || || |||| | || | ||||| || Sbjct 16407 AAAACGCTAGAACTCGTGAAATAAAGTAACGTTCATCGTCATTCAGCCTAAGTT---CCC 16351 Query 16710 AGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 |||| || ||| | | | ||| |||||||| ||||| |||||||| |||||| Sbjct 16350 AGTCCTGAATATCCTGGGCCAGATCAACCTCTTCAGTTGTCCAGAAAGAAGCTTCAGCCT 16291 Query 16770 TTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 ||||| | ||| || ||||| | |||||||| | |||| Sbjct 16290 GCTTATAAGCCTGCCAGATACTCTCGTACTCGATAGGAAAGAGAACA 16244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511543269400