Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 111 4e-19 seq23 98.7 2e-15 seq34 93.3 1e-13 >seq3 Length=255871 Score = 111 bits (122), Expect = 4e-19 Identities = 161/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| ||||| || |||| ||||||||||| | || Sbjct 112805 CGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTG 112746 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || || |||||||| ||||| || ||||| ||| ||| ||| Sbjct 112745 CGGCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATACCT 112686 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||| || ||| |||| || | |||||| | | ||| || || | Sbjct 112685 TCCTTATCACTAATTTTGCTCTTTACGGCCTCAATGGTGTCATTGGATTCAACCTCGAGG 112626 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || || ||||| || | ||||| || |||||| Sbjct 112625 GTGATAGTCTTTCCTGTTAGAGTCTTGATGAAAATCTG---CATTTT 112582 >seq23 Length=679897 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| |||||||| |||| ||| || || | | ||| | || || || |||||| Sbjct 614900 TGCAGAGTGGACTCCTTCTGGATGTTATACTCGGAAAGAGTGCGGCCGTCCTCAAGCTGC 614959 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT-CTCGCTCCTGAATCTT 199545 || || |||||||| |||||||||||||| ||| ||| |||| || | ||| ||||| Sbjct 614960 TTGCCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATACCTTCCTTGTCGCTG-ATCTT 615018 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| | ||||| ||| || | | || || || | ||||| ||||| || || Sbjct 615019 GCTCTTCACAGCTTCGATGGTATCATTAGACTCCACTTCAAGAGTGATAGTCTTTCCGGT 615078 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || | ||| || || Sbjct 615079 CAAGGTCTTGATAAAGATCTG 615099 >seq34 Length=648589 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| |||||||| |||| ||||||||||| | || | ||||| Sbjct 446332 AGCACCAAGTGAATAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCC 446391 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT-CTCGCTC 199536 || ||||| || || |||||||| | |||||||||||| ||| ||| |||| || | Sbjct 446392 TCGAGCTGTTTACCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATACCTTCCTTGTCG 446451 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| || || | |||| |||||| | | || || || | || || || Sbjct 446452 CTG-ATCTTGCTTTTGACAGCCTCGATGGTGTCATTAGACTCAACCTCGAGGGTAATAGT 446510 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| | || || | ||||| || |||||| Sbjct 446511 CTTTCCCGTCAACGTCTTTATGAAAATCTG---CATTTT 446546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920406710293