Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq22 145 8e-30 seq34 107 2e-18 seq3 107 2e-18 seq23 96.9 3e-15 >seq22 Length=83673 Score = 145 bits (160), Expect = 8e-30 Identities = 532/820 (65%), Gaps = 31/820 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || ||||| || || || |||| ||||| | ||| ||||| || || ||| Sbjct 17098 TTCTCGAAGAAATTGGTCTTACCAGCCAATGAAATATTCTCCATGAAATCGAAAGGATTG 17039 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATC-AGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 || ||||| |||| | | || | | | |||||||| || || ||||| ||||| Sbjct 17038 GCGACATTGTACACCTTGTT-CTGACCCAAAGCTACGAGCAGTCTATCAGCCACAAACTC 16980 Query 132744 GATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803 || || || ||| ||| ||| | || || |||| || |||| || || | Sbjct 16979 GACATACTGGTTCATTAAGTCGGCATTCATACCGAGTAGACTGACAGGCAAAGCATCTCT 16920 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT---TTCCCTAACGCGCGCCGC 132860 || | ||||| || |||| || || || | || ||| |||| | | Sbjct 16919 GAAGTACTCCTGCTCAATATCGACTGCTTCAGTAAGAATACGTTCTATAACAAAAG--GT 16862 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| | | ||| | ||||||| || | | | ||||| || ||| ||| | ||||| Sbjct 16861 GCTGGTCTGTT-CTCCAAATGGCTGTAAAGGAGACAAGCGAAATCGGTATGAAGACCCTC 16803 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | ||||| | ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 16802 GTCACGAGAAATCAACTCGTTACTGAAGGTCAAACCCGGCATAAGGCCACGCTTTTTGAG 16743 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || || || || || || || ||||| || ||||| || || ||||| || || Sbjct 16742 CCAGAAAATAGCAGCAAAGGATCCTGAGAAGAAAACACCCTCAACAGCTGCGAATGCGAC 16683 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || ||||| |||| | ||||| | | | |||||||| || ||||| | |||||| Sbjct 16682 TAGTCGCTCAGCGAAACTAGCTTCCTCGTCAGTAATCCAGCGAAGAGCCCACTTGGCCTT 16623 Query 133101 -TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA--AACGGAGTTTCTCTTCCGA 133157 |||| ||| || ||||| ||||| | || | ||| | | ||| ||| | Sbjct 16622 CTTCTGAATGGCA-GGAATCGTGAAAATGGCATCAAAAAGGAACTGGGATTC-CTT---A 16568 Query 133158 GGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215 | | ||||| ||||| || || |||||||| ||||| | ||||||||| Sbjct 16567 GTTTCCTTGACGTAAGTGTCAATAAGCAGACTGTACATTTCAGAGTGAATGTTCTCCATC 16508 Query 133216 GCGATTTGAAAGCCGTAAAAGCACCGCGCCTC-----GACCACCTGCACTTCTTGAGCGA 133270 || || || |||||||||||| ||||| |||| | || | || || Sbjct 16507 ATAATCTGGAATCCGTAAAAGCACTTGGCCTCAGAGATACCAACGTCAGTACT-----GA 16453 Query 133271 AACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGT 133330 | | |||| || || || || || ||||| || ||||| ||||| || || || Sbjct 16452 ACCTGGAAACCAAGTTCTCATTCACAATACCGTCACTAGCGGCAAAAAACGCTAGAACTC 16393 Query 133331 GCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC---GCTCCCAGTCGCGCGTGTCCTTGG 133387 | || || | || || | ||| |||| | | |||||||| | | |||| || Sbjct 16392 GTGAAATAAAGTAACGTTCATCGTCATTCAGCCTAAGTTCCCAGTCCTGAATATCCTGGG 16333 Query 133388 ACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||| || ||||| || ||||| || || || || || Sbjct 16332 CCAGATCAACCTCTTCAGTTGTCCAGAAAGAAGCTTCAGC 16293 >seq34 Length=648589 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||| |||| ||| | ||||| || || || ||| |||| || ||| | Sbjct 446546 AAAATGCAGATTTTCATAAAGACGTTGACGGGAAAGACTATTACCCTCGAGGTTGAGTCT 446487 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | ||| || ||| |||||| || || ||||| | ||| Sbjct 446486 AATGACACCATCGAGGCTGTCAAAAGCAAGATCAGCGACAAGGAAGGTATTCCTCCTGAC 446427 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| || |||||||| || || | |||||||| |||||| Sbjct 446426 CAGCAGCGTTTGATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTTTCTGACTAC 446367 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||||| | || | || |||||||| ||| Sbjct 446366 AACATCCAGAAGGAGTCCACTATTCACTTGGTGCTTCGT 446328 >seq3 Length=255871 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||| | || || || || || || || |||||| |||| || || || Sbjct 112582 AAAATGCAGATTTTCATCAAGACTCTAACAGGAAAGACTATCACCCTCGAGGTTGAATCC 112641 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | | |||||| ||||| || || || || ||||| | || Sbjct 112642 AATGACACCATTGAGGC-CGTAAAGAGCAAAATTAGTGATAAGGAAGGTATTCCTCCTGA 112700 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| || || || | ||| ||||||||||| || || | ||||||||| ||||| Sbjct 112701 CCAACAACGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCTGACTA 112760 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || || | || || || ||||| || ||| | | ||||| Sbjct 112761 CAACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGCGG 112811 >seq23 Length=679897 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || ||| |||||| || || ||||| | ||||| ||||| || || | ||| ||||| Sbjct 615018 AAGATCAGCGACAAGGAAGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGCAAG 614959 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || ||| || |||||||| ||||| | || |||||| Sbjct 614958 CAGCTTGAGGACGGCCGCACTCTTTCCGAGTATAACATCCAGAAGGAGTCCACTCTGCAT 614899 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || |||||| | || || Sbjct 614898 TTGGTTCTCCGTTTGCGTGGTGG 614876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172306079360