Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04-
17] 79 sequences; 9,328,382 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq66 224 1e-53
seq22 185 1e-41
>seq66
Length=396251
Score = 224 bits (248), Expect = 1e-53
Identities = 460/681 (68%), Gaps = 8/681 (1%)
Strand=Plus/Plus
Query 47886 GATGCTAGATTACATACAGC---TACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942
|| || |||||||||||||| | ||||| ||| ||| || | | ||||||
Sbjct 306779 GAAGCCAGATTACATACAGCAGTTTCCTCA---GGACTAGAGTACTCAACGATTTCACAG 306835
Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA-CATGC 48001
|| | |||| || ||||||||||| | ||| | |||||| | |||| | ||
Sbjct 306836 CACAAATTAGAACTCTTGATAGTACCAAGATTACGCTGATTACTCTTGCGGTTAGCCTGA 306895
Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061
||||| |||||||| ||||| | || || || | |||| ||| | || | | |||
Sbjct 306896 -TCCTTATAAAGCATGAAAGGATTACCTGTCTCAGTTTGAGCTTCCAAAATGGCGTACCA 306954
Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121
|| || ||| || || | | | ||||| | |||| || || || |
Sbjct 306955 AAGCTTCTGAGCTTTGATGGTACGACGACCTTTACCCATACGTTCATAACGTGTGTAAAG 307014
Query 48122 CTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAA 48181
|| || |||||||| ||||| |||| | | | ||||| ||||| || |||||||||||
Sbjct 307015 CTCTTCGAATTCATCACCATAAACATCAGCAAGACCAGGGCATTCGTTGGGACACATCAA 307074
Query 48182 TGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTAT 48241
|| ||| || ||||| || ||||| |||| |||| || || ||||||||||| |
Sbjct 307075 TGTCCACTCTCCATCAGACTTAACTCTCTTCATGAATAAGTCAGGAATCCAAAGAGCCAA 307134
Query 48242 AAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTC 48301
||| | ||| | | | | |||||| || ||| | ||| | ||| || | |||||
Sbjct 307135 AAACAGATCACGGGCACGGACTTCTTCCTTACCAGTGTTCTTACGAAGATCGATGAAGTC 307194
Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361
| | |||| ||||||| ||||| | ||| || || | ||||||| ||||| || ||
Sbjct 307195 AAAAACATCATCATGCCAGGGTTCAAGATAAATAGCGAAAGCACCTGGACGTTTGTTGCC 307254
Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421
|| ||||| | ||| | ||||| || || | || | | |||||| | |||||| ||
Sbjct 307255 ACCCTGATCAACATAACGAGCAGTGTTATTGAAGACACGAAGCATTGGAAGAATACCGTT 307314
Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT 48481
||| |||| || || || | || ||| ||| | || | ||||| || ||
Sbjct 307315 GGATGTACCGTTAGTACCGGCGATGTAAGAACCAGTGGCACGGATATTGTGAACATTAAG 307374
Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541
||| |||||||| || |||||| || |||||||| ||| |||||||||||||| ||
Sbjct 307375 ACCAATACCACCAGCAGATTTAGAAATAAGAGCACAAGATTTTAGGGTATCATAAATGCC 307434
Query 48542 TTCTATACTATCATCTATCAT 48562
|| ||| || ||| ||||
Sbjct 307435 ATCGATAGAGTCGTCTTTCAT 307455
>seq22
Length=83673
Score = 185 bits (204), Expect = 1e-41
Identities = 599/920 (65%), Gaps = 25/920 (3%)
Strand=Plus/Minus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | ||| | || || |||||||| || || || | ||||| |||
Sbjct 17119 TTTTGGTAGTCTGAAACACGCTTCTCGAAGAAATTGGTCTTACCAGCCAATGAAATATTC 17060
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATA--tttttttGAATCCTAATTCTAATA 18787
||||| ||||| || ||||| ||||| || | || || ||| || || ||| |
Sbjct 17059 TCCATGAAATCGAAAGGATTGGCGACATTGTACACCTTGTTCTGA--CCCAAAGCTACGA 17002
Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847
| |||||||| || ||||| | | ||| |||||| | || |||||| || | ||
Sbjct 17001 GCAGTCTATCAGCCACAAACTCGACATACTGGTTCATTAAGTCGGCATTCATACCGAGTA 16942
Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907
| ||||| | |||||| | | | || || || |||| ||||| || | | ||
Sbjct 16941 GACTGACAGGCAAAGCATCTCTGAAGTACTCCTGCTCAATATCGACTGCTTCAGTAAGAA 16882
Query 18908 TAGATACAACTCTATCTTCATTAGGAG--GGTATAGA----AGATGTTTAAACATCAAAC 18961
|| | ||||| || ||| | ||| | | ||| | | | | ||
Sbjct 16881 TACGT-----TCTATAA-CAAAAGGTGCTGGTCTGTTCTCCAAATGGCTGTAAAGGAGAC 16828
Query 18962 ATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021
| || ||||| ||| || |||||||| | | ||||| || ||| || || ||||
Sbjct 16827 AAGCGAAATCGGTATGAAGACCCTCGTCACGAGAAATCAACTCGTTACTGAAGGTCAAAC 16768
Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081
| ||||| || || | ||||| | |||||| |||| |||||| ||||| || ||||| |
Sbjct 16767 CCGGCATAAGGCCACGCTTTTTGAGCCAGAAAATAGCAGCAAAGGATCCTGAGAAGAAAA 16708
Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAA 19141
||| || || ||||| || || ||||||| || | ||||||| || | | | ||
Sbjct 16707 CACCCTCAACAGCTGCGAATGCGACTAGTCGCTCAGCGAAACTAGCTTCCTCGTCAGTAA 16648
Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201
|||| || ||||| | |||||||| | | || || || || | || ||
Sbjct 16647 TCCAGCGAAGAGCCCACTTGGCCTTCTTCTGAATGGCAGGAATCGTGAAAATGGCATCAA 16588
Query 19202 ATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261
| || || || | || || || || || | || || | | |||||||||||
Sbjct 16587 AAAGGAACTGGGATTCCTTAGTTTCCTTGACGTAAGTGTCAATAAGCAGACTGTACATTT 16528
Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321
| || ||||| || || || ||||| ||||||||||| || | || || | ||
Sbjct 16527 CAGAGTGAATGTTCTCCATCATAATCTGGAATCCGTAAAAGCACTTGGCCTCAGAGATAC 16468
Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381
|| ||| ||| || || ||||| || ||||| || || || |||||||| ||||
Sbjct 16467 CAACGTCAGTACTGAACCTGGAAACCAAGTTCTCATTCACAATACCGTCACTAGCGGCAA 16408
Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTTAATGTATTCCA 19436
|||| |||| || || |||||| | |||||| | || ||| || | |||
Sbjct 16407 AAAACGCTAGAACTCGTGAAATAAAGTAACGTTCATCGTCATTCAGCCTAA-GT-TCCCA 16350
Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496
|| | |||||| | | | ||| || |||||| |||||| |||||||| || || |
Sbjct 16349 GTCCTGAATATCCTGGGCCAGATCAACCTCTTCAGTTGTCCAGAAAGAAGCTTCAGCCTG 16290
Query 19497 TTTATACATGTTCCATATA-TCACGATATTGTATAGGAAATATAACAAATCTATTTTTAT 19555
||||| | ||| ||| || || || | |||||||| | |||||| | || |
Sbjct 16289 CTTATAAGCCTGCCAGATACTCTCG-TACTCGATAGGAAAGAGAACAAAACGATGAGGGT 16231
Query 19556 TTTCTTTAAGAATAGGTTCC 19575
| || || | |||||| |||
Sbjct 16230 TCTCCTTCAAAATAGGCTCC 16211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108244917560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |