Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq66 224 1e-53 seq22 185 1e-41 >seq66 Length=396251 Score = 224 bits (248), Expect = 1e-53 Identities = 460/681 (68%), Gaps = 8/681 (1%) Strand=Plus/Plus Query 47886 GATGCTAGATTACATACAGC---TACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 || || |||||||||||||| | ||||| ||| ||| || | | |||||| Sbjct 306779 GAAGCCAGATTACATACAGCAGTTTCCTCA---GGACTAGAGTACTCAACGATTTCACAG 306835 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA-CATGC 48001 || | |||| || ||||||||||| | ||| | |||||| | |||| | || Sbjct 306836 CACAAATTAGAACTCTTGATAGTACCAAGATTACGCTGATTACTCTTGCGGTTAGCCTGA 306895 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 ||||| |||||||| ||||| | || || || | |||| ||| | || | | ||| Sbjct 306896 -TCCTTATAAAGCATGAAAGGATTACCTGTCTCAGTTTGAGCTTCCAAAATGGCGTACCA 306954 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121 || || ||| || || | | | ||||| | |||| || || || | Sbjct 306955 AAGCTTCTGAGCTTTGATGGTACGACGACCTTTACCCATACGTTCATAACGTGTGTAAAG 307014 Query 48122 CTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAA 48181 || || |||||||| ||||| |||| | | | ||||| ||||| || ||||||||||| Sbjct 307015 CTCTTCGAATTCATCACCATAAACATCAGCAAGACCAGGGCATTCGTTGGGACACATCAA 307074 Query 48182 TGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTAT 48241 || ||| || ||||| || ||||| |||| |||| || || ||||||||||| | Sbjct 307075 TGTCCACTCTCCATCAGACTTAACTCTCTTCATGAATAAGTCAGGAATCCAAAGAGCCAA 307134 Query 48242 AAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTC 48301 ||| | ||| | | | | |||||| || ||| | ||| | ||| || | ||||| Sbjct 307135 AAACAGATCACGGGCACGGACTTCTTCCTTACCAGTGTTCTTACGAAGATCGATGAAGTC 307194 Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 | | |||| ||||||| ||||| | ||| || || | ||||||| ||||| || || Sbjct 307195 AAAAACATCATCATGCCAGGGTTCAAGATAAATAGCGAAAGCACCTGGACGTTTGTTGCC 307254 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 || ||||| | ||| | ||||| || || | || | | |||||| | |||||| || Sbjct 307255 ACCCTGATCAACATAACGAGCAGTGTTATTGAAGACACGAAGCATTGGAAGAATACCGTT 307314 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT 48481 ||| |||| || || || | || ||| ||| | || | ||||| || || Sbjct 307315 GGATGTACCGTTAGTACCGGCGATGTAAGAACCAGTGGCACGGATATTGTGAACATTAAG 307374 Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 ||| |||||||| || |||||| || |||||||| ||| |||||||||||||| || Sbjct 307375 ACCAATACCACCAGCAGATTTAGAAATAAGAGCACAAGATTTTAGGGTATCATAAATGCC 307434 Query 48542 TTCTATACTATCATCTATCAT 48562 || ||| || ||| |||| Sbjct 307435 ATCGATAGAGTCGTCTTTCAT 307455 >seq22 Length=83673 Score = 185 bits (204), Expect = 1e-41 Identities = 599/920 (65%), Gaps = 25/920 (3%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||| | || || |||||||| || || || | ||||| ||| Sbjct 17119 TTTTGGTAGTCTGAAACACGCTTCTCGAAGAAATTGGTCTTACCAGCCAATGAAATATTC 17060 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATA--tttttttGAATCCTAATTCTAATA 18787 ||||| ||||| || ||||| ||||| || | || || ||| || || ||| | Sbjct 17059 TCCATGAAATCGAAAGGATTGGCGACATTGTACACCTTGTTCTGA--CCCAAAGCTACGA 17002 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | |||||||| || ||||| | | ||| |||||| | || |||||| || | || Sbjct 17001 GCAGTCTATCAGCCACAAACTCGACATACTGGTTCATTAAGTCGGCATTCATACCGAGTA 16942 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | ||||| | |||||| | | | || || || |||| ||||| || | | || Sbjct 16941 GACTGACAGGCAAAGCATCTCTGAAGTACTCCTGCTCAATATCGACTGCTTCAGTAAGAA 16882 Query 18908 TAGATACAACTCTATCTTCATTAGGAG--GGTATAGA----AGATGTTTAAACATCAAAC 18961 || | ||||| || ||| | ||| | | ||| | | | | || Sbjct 16881 TACGT-----TCTATAA-CAAAAGGTGCTGGTCTGTTCTCCAAATGGCTGTAAAGGAGAC 16828 Query 18962 ATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021 | || ||||| ||| || |||||||| | | ||||| || ||| || || |||| Sbjct 16827 AAGCGAAATCGGTATGAAGACCCTCGTCACGAGAAATCAACTCGTTACTGAAGGTCAAAC 16768 Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081 | ||||| || || | ||||| | |||||| |||| |||||| ||||| || ||||| | Sbjct 16767 CCGGCATAAGGCCACGCTTTTTGAGCCAGAAAATAGCAGCAAAGGATCCTGAGAAGAAAA 16708 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAA 19141 ||| || || ||||| || || ||||||| || | ||||||| || | | | || Sbjct 16707 CACCCTCAACAGCTGCGAATGCGACTAGTCGCTCAGCGAAACTAGCTTCCTCGTCAGTAA 16648 Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201 |||| || ||||| | |||||||| | | || || || || | || || Sbjct 16647 TCCAGCGAAGAGCCCACTTGGCCTTCTTCTGAATGGCAGGAATCGTGAAAATGGCATCAA 16588 Query 19202 ATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 | || || || | || || || || || | || || | | ||||||||||| Sbjct 16587 AAAGGAACTGGGATTCCTTAGTTTCCTTGACGTAAGTGTCAATAAGCAGACTGTACATTT 16528 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | || ||||| || || || ||||| ||||||||||| || | || || | || Sbjct 16527 CAGAGTGAATGTTCTCCATCATAATCTGGAATCCGTAAAAGCACTTGGCCTCAGAGATAC 16468 Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 || ||| ||| || || ||||| || ||||| || || || |||||||| |||| Sbjct 16467 CAACGTCAGTACTGAACCTGGAAACCAAGTTCTCATTCACAATACCGTCACTAGCGGCAA 16408 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTTAATGTATTCCA 19436 |||| |||| || || |||||| | |||||| | || ||| || | ||| Sbjct 16407 AAAACGCTAGAACTCGTGAAATAAAGTAACGTTCATCGTCATTCAGCCTAA-GT-TCCCA 16350 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || | |||||| | | | ||| || |||||| |||||| |||||||| || || | Sbjct 16349 GTCCTGAATATCCTGGGCCAGATCAACCTCTTCAGTTGTCCAGAAAGAAGCTTCAGCCTG 16290 Query 19497 TTTATACATGTTCCATATA-TCACGATATTGTATAGGAAATATAACAAATCTATTTTTAT 19555 ||||| | ||| ||| || || || | |||||||| | |||||| | || | Sbjct 16289 CTTATAAGCCTGCCAGATACTCTCG-TACTCGATAGGAAAGAGAACAAAACGATGAGGGT 16231 Query 19556 TTTCTTTAAGAATAGGTTCC 19575 | || || | |||||| ||| Sbjct 16230 TCTCCTTCAAAATAGGCTCC 16211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108244917560