Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq34 161 8e-34 seq12 154 1e-31 seq3 111 1e-18 seq66 109 4e-18 >seq34 Length=648589 Score = 161 bits (178), Expect = 8e-34 Identities = 367/545 (67%), Gaps = 13/545 (2%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| |||||||| || ||||| |||||| |||||| ||| |||| | ||| Sbjct 411704 TATTGGTATTGATTTAGGTACAACATACTCTTGTGTAGGTGTTATGCAGCATGGCAGAGT 411763 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||||| ||||||| ||||| |||||| | | ||||| ||||| ||| |||||| ||| Sbjct 411764 TGAAATTCTTGCCAACGATCAGGGTAACCGTATCACTCCTTCTTACGTTGCTTTCAAGGA 411823 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 |||| ||| ||||||||||| || || |||| || | ||| | ||||| Sbjct 411824 TGGCGAACGTTTGGTTGGTGATGCTGCTAAGAATCAGGCTGCCTCTAACGTTGAAAATAC 411883 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 ||||||||| || ||| | ||||| | || | ||||| | ||| ||| || Sbjct 411884 CATTTTTGATATCAAGCGTATCATTGGTCTGAAATTCAGAGATTCTAGTGTCCAGAAGGA 411943 Query 550234 TAT--GAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||| |||| ||| |||||| | |||| | | | |||||| | | ||| | Sbjct 411944 TATCAGAAG-ATT-CCCTTTCACAGTTGTAGAGAAGGATAGCAAACCTGTTGTCCAAGTC 412001 Query 550291 TACTCATGAAGGATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATCTATGGTTTTA 550348 ||| || ||| | | | ||||| || || | || | |||||||| Sbjct 412002 AACT-TCGACGGA-----GAGAAGACTTTCACTCCTGAGGAGATCAGTGCCATGGTTTTG 412055 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 || ||||| || | || | | | | ||| | | || || |||| || | Sbjct 412056 GGTAAGATGAAGCAGATTGCTGAGGACTATCTCGGTGAGAAGGTCACTCATGCTGTTGTC 412115 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || |||||||| | || ||||| ||||| || |||||||| |||| Sbjct 412116 ACTGTCCCTGCCTACTTTAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGTACTATT 412175 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || | | |||||||||| | ||||||| ||||||||||| || |||| || || Sbjct 412176 GCCGGTTTGACTGTTCTTCGTGTCGTCAATGAGCCTACTGCTGCCGCTATTGCCTACGGT 412235 Query 550529 CTTGA 550533 ||||| Sbjct 412236 CTTGA 412240 >seq12 Length=715620 Score = 154 bits (170), Expect = 1e-31 Identities = 340/501 (68%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 550043 AATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT 550102 |||| | |||||||||||||||||| ||||| |||||| | |||||||| || | ||| Sbjct 374185 AATGACAGAGTTGAAATTATTGCCAACGATCAGGGTAACCGTACTACTCCTTCGTTCGTT 374244 Query 550103 TCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT 550162 | ||||| || ||||| | | | |||||||||| || || |||| || | || Sbjct 374245 GCCTTCACTGACACTGAGCGTCTTATTGGTGATGCCGCCAAGAATCAGGCTGCCATGAAC 374304 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTC---G 550219 ||| | ||||| | || ||||| || ||| | ||||| | | | ||||| | | Sbjct 374305 CCTTCTAATACCGTCTTCGATGCCAAGCGTCTTATTGGCCGTAAGATGGATGATCCTGAG 374364 Query 550220 ACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT 550279 ||| ||| ||||| ||||||| |||||| | || || | || || Sbjct 374365 ACT---CAGAACGATATTAAGCATTTCCCTTTCAAGGTTATTGACAAGAACAATAAGCCC 374421 Query 550280 TATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATC 550338 ||||| | | | |||| | | || | ||| | || || | || || || Sbjct 374422 GTCATTGAGGTTGAATAC-AAGGGTGAGACCAAGACTTTCACTCCTGAGGAGATCTCTTC 374480 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCTT--TTGTTGGTCAAGAAGTTAC 550395 |||||| | | || ||||| | || || || ||| | | |||| ||| ||| Sbjct 374481 CATGGTTCTCACCAAGATGAAGGAGACTGCTGAGGGCTACCTCGGTGGT-AAG--GTTGA 374537 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 | || || || ||||| || || || || || ||||| || ||||| ||||| || || Sbjct 374538 TCAGGCCGTTATTACTGTCCCTGCTTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGA 374597 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||||||||| |||||||||||||||||||||||||| ||||| |||||||| Sbjct 374598 TGCCGGTACTATTGCTGGTCTTAATGTTCTTCGTATTATCAATGAGCCTACCGCTGCTGC 374657 Query 550516 ACTTGCATATGGACTTGATAA 550536 |||| || || ||||| || Sbjct 374658 TATTGCCTACGGTCTTGACAA 374678 >seq3 Length=255871 Score = 111 bits (122), Expect = 1e-18 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | ||||| || ||| | | ||| || ||||| |||| || || | Sbjct 112802 AGACGGAGAACCAAGTGAAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGAGAGGGTGC 112745 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||||||||| ||||| || || || ||||| | ||| || ||||||||||| |||| Sbjct 112744 GGCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATACCTT 112685 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433 | ||||| |||||| ||||| |||||||| || ||| || || | | ||||| Sbjct 112684 CCTTATCACTAATTTTGCTCTTTACGGCCTCAATGGTGTCATTG-GATTCAACCTCGAGG 112626 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||| || || || ||||| || | |||||| ||||| Sbjct 112625 GTGATAGTCTTTCCTGTTAGAGTCTTGATGAAAATCTGCAT 112585 >seq66 Length=396251 Score = 109 bits (120), Expect = 4e-18 Identities = 315/481 (65%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || || ||||| |||||||| | ||||| || | |||| ||||||| Sbjct 199043 GTCGAGATCATCGCTAATGAGCAAGGTAATCGTGTGACTCCTTCCTTTGTTGCTTTCACT 198984 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || | || | | | |||||||||| || || |||| || || ||| || ||| Sbjct 198983 GATAAGGAGCGTCTTATTGGTGATGCTGCTAAGAATCAGGCTGCTCTTAACCCCCGCAAC 198924 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| |||| |||||||| ||| | ||||| | |||| | ||| | | || ||| Sbjct 198923 ACTGTTTTCGATGCTAAGCGTCTCATTGGCCGTCGTTTCGACGATGCCAACGTCCAGCAG 198864 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 || || ||| ||||||||| | || || | || || || || || | | Sbjct 198863 GACATCAAGAGCTGGCCTTTCAAGGTTATTGACCACAACGGTAACCCCATGATCGAGGTC 198804 Query 550291 TACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | | | || || ||| || || || | |||| || | ||||| || Sbjct 198803 CAGTACCTTAACGAGAC--TAAGTCTTTCTCCCCCCAGGAAATCTCTGCCATGGTCTTGG 198746 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | |||||||| ||| || || ||| || | ||| | || || || | Sbjct 198745 TTAAAATGAAGGAAATCGCTGAGGCCAAGCTTGCCCAGAAGGTTGACAAGGCTGTCATCA 198686 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || ||||| |||||||| |||||||| || | Sbjct 198685 CTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACTAAGGATGCTGGTTCCATCG 198626 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| ||||| ||||||||||| ||||| || ||||| |||||||| |||| || || | Sbjct 198625 CTGGTCTTAACGTTCTTCGTATCATCAACGAGCCTACCGCTGCTGCTATTGCTTACGGTC 198566 Query 550530 T 550530 | Sbjct 198565 T 198565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029291822123710