Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq12 255 4e-62 seq34 114 1e-19 seq16 107 1e-17 seq66 98.7 7e-15 >seq12 Length=715620 Score = 255 bits (282), Expect = 4e-62 Identities = 947/1461 (65%), Gaps = 26/1461 (2%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 ||||| ||||| || |||| || || || ||||| || || || | || |||||| Sbjct 375632 TTAGTGATAGTGATCTTCTGAGACTTACCAGTAGATTTGTCGGCAGCGGAGACGTTAAGA 375573 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| || ||||| | ||| || || || || || ||||| || | | ||||| Sbjct 375572 ATACCGTTAGCATCGACATCGAAGGTAACCTCGATCTGAGGAGTACCACGGGGGGCAGGG 375513 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | || || | || ||||| ||| | || ||| Sbjct 375512 GGGATACCAGAAAGCTCGAACTTACCGAGGATGTTGTTATCACGAGTAAGAGGACGCTCA 375453 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | ||||| || ||| || || || | | ||| | || | ||| Sbjct 375452 CCCTCGAAGACCTGGATCAAGACACCAGGCTGGTTGTCAGCAGCAGTAGAGAAGA-TCTC 375394 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || || ||||| || ||||||| |||| ||||| | |||||||| Sbjct 375393 AGACTTCTTGGTGGGAATAGTGCTGTTTCTGGGGATAAGCTTGGTGAACTGGCCACCAGC 375334 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 || || | ||| | ||| | ||||| |||||| | || | | | ||| || || Sbjct 375333 GGTCTCAATACCCAAAGACAAAGGAGCGACATCGAGAAGCAACAAGTCCTGA-GTCTTGG 375275 Query 281740 ATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | || | | |||| ||| ||||| || || | ||| ||||| || ||||| || |||| Sbjct 375274 AAGAGGTGTCACCAGTAAGGATAGCAGCCTGGACAGCGGCACCGTAAGCAACGGCCTCAT 375215 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 281858 |||| || | || || | | |||||| ||| || | |||| || | ||| | Sbjct 375214 CAGGGTTGATAGAACGGTTCAACTCCTTACCAGAGAAGAAGTCAGAAACGAGCT-TCTGA 375156 Query 281859 -CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 |||| || ||||||| || || ||||| | ||||| || | || | || || Sbjct 375155 ACCTTGGGGATACGAGTAGAACCACCAACAAGGACAATCTCGTTAACATCAGACTTGGAG 375096 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 | || | |||| ||||| || ||||| || | | || | || | || Sbjct 375095 ACCTTAGCATCCTTCAAAACCTTCTCAACAGGGGCCATGGTAGAACGGAAGAGATCCTGG 375036 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAA 282036 || || || ||||| || | ||| | || | || || ||||| || ||| | | Sbjct 375035 CAGAGCTCCTCGAAACGGGCACGAGTGATAGA-AGTGTAGAAGTCAATACCCTCGTAAAG 374977 Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 ||| |||| ||||| | || ||||| |||||||| || ||||| |||||||| || || Sbjct 374976 AGAGTCAATCTCAATAGGGGTCTGAGTAGAAGAAGAGAGGGCACGCTTAGCACGCTCGCA 374917 Query 282097 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTT 282154 || || || || | || | || |||| || | | | || | || || ||| Sbjct 374916 AGCGGTTCTAAGACGACGAAGAGCAC--GCTGGTTACCAGTGATGTCCTTCTTGTACTTT 374859 Query 282155 CTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAAT 282214 |||||||| || | | | | | || || || ||||| ||||| ||||| ||||| Sbjct 374858 CTCTTGAACTCCTGAGCGAAGTGGTTAACGAGGCGGTTATCGAAATCCTCACCACCCAAG 374799 Query 282215 TTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTA 282274 | ||||| || | || || | || | ||| | || || |||| |||||||| Sbjct 374798 TGAGTATCACCAGCAGTGGCCTTGACCTCGAAGATACCGTCATCAATGCTCAAAAGAGAG 374739 Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG--T 282332 ||||| ||| |||||||||| ||| || ||||| || || | || || | | Sbjct 374738 ACATCGAAGGTACCACCACCCAAATCGAAGATAAGAACGTTG--TGCTCACCCTGGCCCT 374681 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | || |||||||| || |||| ||||||||| || || ||||| ||||| | | ||||| Sbjct 374680 TCTTGTCAAGACCGTAGGCAATAGCAGCAGCGGTAGGCTCATTGATAATACGAAGAACAT 374621 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 ||||||||||||| | || ||||| || || || || | || || ||||| || || | Sbjct 374620 TAAGACCAGCAATAGTACCGGCATCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAAG 374561 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA---ATATAAGCGCT-TGCTGTT 282508 |||| |||||||||||||| ||| | | | || ||| | | ||| || || || Sbjct 374560 CAGGGACAGTAATAACGGC--CTGAT-CAACCTTACCACCGAGGT-AGCCCTCAGCAGTC 374505 Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA 282568 | ||||| || | | || ||| || || || | || |||| | ||||| ||| Sbjct 374504 TCCTTCATCTTGGTGAGAACCATGGAAGAGATCTCCTCAGGAGTGAAAGTCTTGGTCTCA 374445 Query 282569 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628 | ||| || |||| || ||||| | |||||| || || || || Sbjct 374444 CCCTTGTATTCAACCTCAATGACGGGCTTATTGTTCTTGTCAATAACCTTGAAAGGGAAA 374385 Query 282629 TATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAATTAATCGTTTTGC 282687 | || ||||| | | | || || |||| | | | ||||| | || || || Sbjct 374384 TGCTTAATATC-GTTCTGAGTCTCAGGATCATCCATCTTACGGCCAATAAGACGCTTGGC 374326 Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 ||| || | ||||| | || || | ||||| |||| ||||| ||||| ||||| || Sbjct 374325 ATCGAAGACGGTATTAGAAGGGTTCATGGCAGCCTGATTCTTGGCGGCATCACCAATAAG 374266 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | | || || || || || | ||| | || ||||| || || ||||| ||||| || || Sbjct 374265 ACGCTCAGTGTCAGTGAAGGCAACGAACGAAGGAGTAGTACGGTTACCCTGATCGTTGGC 374206 Query 282808 AATAATTTCAACTTTACCATT 282828 ||||||||||||| | |||| Sbjct 374205 AATAATTTCAACTCTGTCATT 374185 >seq34 Length=648589 Score = 114 bits (126), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGA--TTAACTGCAGCTTGATAT 282727 |||||| | || || ||||||||| ||||| || | ||| ||||| |||| Sbjct 411911 ACCAATGATACGCTTGATATCAAAAATGGTATT--TTCAACGTTAGAGGCAGCCTGATTC 411854 Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 || || ||||| |||| || | |||| || | || | ||| || || ||||| | Sbjct 411853 TTAGCAGCATCACCAACCAAACGTTCGCCATCCTTGAAAGCAACGTAAGAAGGAGTGATA 411794 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 || ||||| ||||| || |||| |||||||||| | |||| ||| |||||||||||| Sbjct 411793 CGGTTACCCTGATCGTTGGCAAGAATTTCAACTCTGCCATGCTGCATAACACCTACACAA 411734 Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAATAGCAATT 282883 | ||||| |||||||||||||||||| ||||| Sbjct 411733 GAGTATGTTGTACCTAAATCAATACCAATAACAATT 411698 Score = 98.7 bits (108), Expect = 7e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||||||| || || ||||||||||| || || || |||| || ||||||||| || Sbjct 581155 TTCTCAAGACCGTAAGCCAAAGCAGCAGCGGTGGGCTCGTTAACAACTCTCAAAACGTTC 581096 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | ||| |||| || ||||| || || ||||| | || ||||| || || || || Sbjct 581095 AAACCGACAATCTGGCCAGCATCCTTGGTTGCTTGACGCTGAGAATCATTGAAGTAAGCG 581036 Query 282455 GGAACAGTAATAACGGCAT 282473 || ||||||| |||||||| Sbjct 581035 GGGACAGTAACAACGGCAT 581017 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 69782 CTGTAATCAGAAATATATAATCCCATAGCTTGTCTGGCTTGATTGTACT--GGAAAATAC 69839 ||||||| || | | ||| |||||||| ||| | | || | ||| || || || Sbjct 144763 CTGTAATTAGTTAAACATACACCCATAGCCTGTTTACCC--ATAGCACTCTGGTAAGTAT 144706 Query 69840 CACGAGGAGATTGATTATGATCTGGGAAAGGAATATTAGATGAAATTAGTCCGAGAATCA 69899 ||| || ||||| ||||||||||||||||||||| |||| | | | | || | ||||| Sbjct 144705 TACGCGGTGATTGGTTATGATCTGGGAAAGGAATAATAGAGGCACTAATGCCCAAAATCA 144646 Query 69900 TACACGGATGAATTTCACAATGAGT 69924 ||| |||||||| |||||||| || Sbjct 144645 TACTTGGATGAATCTCACAATGCGT 144621 >seq16 Length=115662 Score = 107 bits (118), Expect = 1e-17 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 |||| ||||||||||||||| | | |||||||||||||| ||||||||| || | | Sbjct 17360 TTGAAGGGTAAAGAAGGTCGTTTGCGTGGAAATTTGATGGGCAAGCGTGTCAATTTCAGT 17419 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTC 432401 || ||||||||||| || ||| |||||| ||| |||| || | ||||||||||| | Sbjct 17420 GCTCGTACAGTTATCACCGGTGACCCTAATCTTGATCTCGATCAGGTTGGTGTTCC-CAA 17478 Query 432402 AT-TATTGCGAAAAATCTTACTT 432423 || ||||||| | |||| ||| Sbjct 17479 ATCTATTGCGCGTACTCTTTCTT 17501 >seq66 Length=396251 Score = 98.7 bits (108), Expect = 7e-15 Identities = 192/283 (68%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||| | ||| ||||| | |||| || | ||||| | || | ||| | | Sbjct 198413 TATCGAAATCCTGACCACCCAAGTGGGTATCACCAGCAGTAGCCTTAACATTGAAGACAC 198472 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || | | | ||| | |||| ||||| || |||||||||| ||| ||||| || | Sbjct 198473 CACCCTGGATAGAGAGCAGAGAGACATCGAAAGTACCACCACCCAAATCGAAAATGAGAA 198532 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCA---AGACCATACGCAAAAGCAGCAGCAGTTG 282368 | | | | || | ||| || | || ||||| || |||| ||||||||| || | Sbjct 198533 CGTGCTTCTCCTCGTCAGTCTTACCAGCACCGAGACCGTAAGCAATAGCAGCAGCGGTAG 198592 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | || || || || | | ||| ||||||||||| || || ||||| ||||| || | Sbjct 198593 GCTCGTTGATGATACGAAGAACGTTAAGACCAGCGATGGAACCAGCATCCTTAGTAGCCT 198652 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | | || || ||||| || || ||||| ||||| || || || Sbjct 198653 GACGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACAGC 198695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740626521433854