Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04- 17] 79 sequences; 9,328,382 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23 156 5e-33 seq34 140 4e-28 seq3 125 8e-24 seq22 96.9 4e-15 >seq23 Length=679897 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||| ||||||| | ||||| |||||||| |||||||| || ||||| | Sbjct 615102 ATGCAGATCTTTATCAAGACCTTGACCGGAAAGACTATCACTCTTGAAGTGGAGTCTAAT 615043 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | | | ||||| || || ||| |||||||| || |||||||| ||||| Sbjct 615042 GATACCATCGAAGCTGTGAAGAGCAAGAT-CAGCGACAAGGAAGGTATTCCTCCTGACCA 614984 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| ||||| || ||||| | || || || | || ||||| Sbjct 614983 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCCGAGTATAA 614924 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||| | || | ||| | || ||||| Sbjct 614923 CATCCAGAAGGAGTCCACTCTGCATTTGGTTCTCCGTTTGCGTGGTGG 614876 >seq34 Length=648589 Score = 140 bits (154), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || | |||||| | || || ||||||||||| || ||||||||||| Sbjct 446544 AATGCAGATTTTCATAAAGACGTTGACGGGAAAGACTATTACCCTCGAGGTTGAGTCTAA 446485 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACC 27523 ||| | ||| | | | || || || ||| |||||||| || |||||||| |||| Sbjct 446484 TGACACCATCGAGGCTGTCAAAAGCAAGAT-CAGCGACAAGGAAGGTATTCCTCCTGACC 446426 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||||||| | || || |||||||| || |||||||||| || ||||| | ||||| | Sbjct 446425 AGCAGCGTTTGATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTTTCTGACTACA 446366 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| |||||| |||| | || | ||||| || ||||| Sbjct 446365 ACATCCAGAAGGAGTCCACTATTCACTTGGTGCTTCGTCTCCGTGGTGG 446317 >seq3 Length=255871 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || ||||||| || || || |||||||| || || |||||||| || Sbjct 112584 AATGCAGATTTTCATCAAGACTCTAACAGGAAAGACTATCACCCTCGAGGTTGAATCCAA 112643 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| | ||| |||||| || ||||| || |||||||| ||||| Sbjct 112644 TGACACCATTGAGGCCGTAAAGAGCAAAATTAGTGATAAGGAAGGTATTCCTCCTGACCA 112703 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || || ||||| || || || || |||| || ||||| | ||||| || Sbjct 112704 ACAACGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCTGACTACAA 112763 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || ||||||||||| | || | |||||||| || ||| Sbjct 112764 CATCCAGAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGCGGA 112812 >seq22 Length=83673 Score = 96.9 bits (106), Expect = 4e-15 Identities = 207/307 (67%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || || ||||||| || || || || | ||||||||||||| |||||||| || Sbjct 16697 TGTTGAGGGTGTTTTCTTCTCAGGATCCTTTGCTGCTATTTTCTGGCTCAAAAAGCGTGG 16756 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCA 64856 ||| ||||| ||| || | || |||||| |||| ||||| |||||||| || || Sbjct 16757 CCTTATGCCGGGTTTGACCTTCAGTAACGAGTTGATTTCTCGTGACGAGGGTCTTCATAC 16816 Query 64857 AGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCACATGGGACTATAAT 64916 || || || | ||| | |||||| | || ||| |||| ||| | |||| Sbjct 16817 CGATTTCGCTTGTCTCCTTTACAGCCATTTGGAGAACAGACCAGCACCTTTTGTTATAGA 16876 Query 64917 TGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCCGTG 64976 ||| | | || || || ||||| |||| | | | | | || || | || Sbjct 16877 ACGTATTCTTACTGAAGCAGTCGATATTGAGCAGGAGTACTTCAGAGATGC-TTTGCCTG 16935 Query 64977 TC-GTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGATC 65035 || |||| |||| ||| ||||||| ||||| |||||| |||| ||||| || ||| Sbjct 16936 TCAGTCTACTCGGTATGAATGCCGACTTAATGAACCAGTATGTCGAGTTTGTGGCTGATA 16995 Query 65036 GCCTGCT 65042 | ||||| Sbjct 16996 GACTGCT 17002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309836818480