Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bacillaris_20[genbank_20GCA_5F002094175.1_202017-04-
17] 79 sequences; 9,328,382 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq23 156 5e-33
seq34 140 4e-28
seq3 125 8e-24
seq22 96.9 4e-15
>seq23
Length=679897
Score = 156 bits (172), Expect = 5e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||| ||||||| | ||||| |||||||| |||||||| || ||||| |
Sbjct 615102 ATGCAGATCTTTATCAAGACCTTGACCGGAAAGACTATCACTCTTGAAGTGGAGTCTAAT 615043
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | | | ||||| || || ||| |||||||| || |||||||| |||||
Sbjct 615042 GATACCATCGAAGCTGTGAAGAGCAAGAT-CAGCGACAAGGAAGGTATTCCTCCTGACCA 614984
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || || ||||| ||||| || ||||| | || || || | || |||||
Sbjct 614983 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCCGAGTATAA 614924
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||| | || | ||| | || |||||
Sbjct 614923 CATCCAGAAGGAGTCCACTCTGCATTTGGTTCTCCGTTTGCGTGGTGG 614876
>seq34
Length=648589
Score = 140 bits (154), Expect = 4e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || | |||||| | || || ||||||||||| || |||||||||||
Sbjct 446544 AATGCAGATTTTCATAAAGACGTTGACGGGAAAGACTATTACCCTCGAGGTTGAGTCTAA 446485
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACC 27523
||| | ||| | | | || || || ||| |||||||| || |||||||| ||||
Sbjct 446484 TGACACCATCGAGGCTGTCAAAAGCAAGAT-CAGCGACAAGGAAGGTATTCCTCCTGACC 446426
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|||||||| | || || |||||||| || |||||||||| || ||||| | ||||| |
Sbjct 446425 AGCAGCGTTTGATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTTTCTGACTACA 446366
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||| ||||| |||||| |||| | || | ||||| || |||||
Sbjct 446365 ACATCCAGAAGGAGTCCACTATTCACTTGGTGCTTCGTCTCCGTGGTGG 446317
>seq3
Length=255871
Score = 125 bits (138), Expect = 8e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || ||||||| || || || |||||||| || || |||||||| ||
Sbjct 112584 AATGCAGATTTTCATCAAGACTCTAACAGGAAAGACTATCACCCTCGAGGTTGAATCCAA 112643
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||||| | ||| |||||| || ||||| || |||||||| |||||
Sbjct 112644 TGACACCATTGAGGCCGTAAAGAGCAAAATTAGTGATAAGGAAGGTATTCCTCCTGACCA 112703
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||||| || || ||||| || || || || |||| || ||||| | ||||| ||
Sbjct 112704 ACAACGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCTGACTACAA 112763
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| || || ||||||||||| | || | |||||||| || |||
Sbjct 112764 CATCCAGAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGCGGA 112812
>seq22
Length=83673
Score = 96.9 bits (106), Expect = 4e-15
Identities = 207/307 (67%), Gaps = 2/307 (1%)
Strand=Plus/Plus
Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796
||| || || ||||||| || || || || | ||||||||||||| |||||||| ||
Sbjct 16697 TGTTGAGGGTGTTTTCTTCTCAGGATCCTTTGCTGCTATTTTCTGGCTCAAAAAGCGTGG 16756
Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCA 64856
||| ||||| ||| || | || |||||| |||| ||||| |||||||| || ||
Sbjct 16757 CCTTATGCCGGGTTTGACCTTCAGTAACGAGTTGATTTCTCGTGACGAGGGTCTTCATAC 16816
Query 64857 AGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCACATGGGACTATAAT 64916
|| || || | ||| | |||||| | || ||| |||| ||| | ||||
Sbjct 16817 CGATTTCGCTTGTCTCCTTTACAGCCATTTGGAGAACAGACCAGCACCTTTTGTTATAGA 16876
Query 64917 TGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCCGTG 64976
||| | | || || || ||||| |||| | | | | | || || | ||
Sbjct 16877 ACGTATTCTTACTGAAGCAGTCGATATTGAGCAGGAGTACTTCAGAGATGC-TTTGCCTG 16935
Query 64977 TC-GTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGATC 65035
|| |||| |||| ||| ||||||| ||||| |||||| |||| ||||| || |||
Sbjct 16936 TCAGTCTACTCGGTATGAATGCCGACTTAATGAACCAGTATGTCGAGTTTGTGGCTGATA 16995
Query 65036 GCCTGCT 65042
| |||||
Sbjct 16996 GACTGCT 17002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309836818480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |