Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq285 219 4e-52 seq212 123 3e-23 seq295 109 6e-19 seq274 105 7e-18 >seq285 Length=150650 Score = 219 bits (242), Expect = 4e-52 Identities = 532/796 (67%), Gaps = 16/796 (2%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| || ||||||||||| || ||||| | |||||| | ||||| |||||||| Sbjct 139610 TACAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAAATTGACCTAGGTAAGGACACT 139551 Query 116708 AGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 ||||||||||| | ||||||| ||||| | | || | | || || || Sbjct 139550 CACGACTGGGAGCACAAGCTGAACGATGACGAGAGATACTTTGTGTCCCGTGTTCTTGCT 139491 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 || || || || || || ||||| ||||| |||||||| || ||||| ||| | ||| Sbjct 139490 TTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGTGAG 139431 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884 || | ||||||| || ||||||||||| ||||| ||||| ||| | ||| Sbjct 139430 GTTGGTATTCCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATTCAC 139371 Query 116885 TCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT 116944 || || | ||||| || || || || |||||| | | ||| || | Sbjct 139370 TCTGAGACTTATTCTCTTCTGATTGATACATACGTGAAAGA--CAGTAAAGAGGCCGACT 139313 Query 116945 TT--GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGC 117002 || ||| ||||||||| || || || | | | ||||||| ||||||| || | Sbjct 139312 TTCTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCACTTC 139253 Query 117003 GCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 | |||||| || | ||| | |||||| |||||||| | |||||||| || || | Sbjct 139252 GTTGGATCAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTGTTG 139193 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 | || |||||||| ||| || || | || || ||||| || || || || |||| Sbjct 139192 AAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGCTCA 139133 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACT 117182 |||| || || |||||| |||||| || || || | || |||||| |||| ||| | Sbjct 139132 TGCCTGGGCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCGATT 139073 Query 117183 TTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGA 117242 |||||||| | || |||| || ||| | | || || ||| || ||| | |||| Sbjct 139072 TTGCCTGTCTCCTATTCAGCCACTTGCAGAACCGCCCTAGCCGTGCTATCGTT-GAGAGA 139014 Query 117243 -TCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 || |||| || || |||| ||| ||||| | | || ||| || |||| || || Sbjct 139013 ATCATCACTGAAGCCGTCGACATTGAGCAAGAATACTTCCGCGATGCTTTGCCTGTAAGT 138954 Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTG 117361 || || || | || ||| ||| ||||| ||||||||||||||||| | || Sbjct 138953 CTTCTCGGCATGAACGCCGACCTCATGAACCAATATGTCGAGTTCGTCGCCGACCGTTTG 138894 Query 117362 CTGCTCGAGCTGGTCGGCGCCAAGC---ACTACAACACGCCCAACCCGCTGGACTTTATG 117418 ||| | ||| | ||| ||||| |||||| | |||| ||| | ||||||||| Sbjct 138893 CTGTT--GGCT-TTGGGCCACAAGCGCGTCTACAATGTGACCAATCCGTTTGACTTTATG 138837 Query 117419 AACCTCATCTC-CTTG 117433 | |||||| |||| Sbjct 138836 GAGAACATCTCTCTTG 138821 >seq212 Length=31356 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || |||||||| || || |||||| | || ||||| | | | Sbjct 28052 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 28111 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || |||||| || ||||| || | |||||| Sbjct 28112 GACACGATCGAGGCTGTGAAGAGCAAGATCAGCGACAAGGAAGGCATTCCGCCTGACCAG 28171 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| ||||| | ||||||||| ||||||||| Sbjct 28172 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAAC 28231 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| ||||||| || | ||| | ||| Sbjct 28232 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGC 28267 >seq295 Length=432776 Score = 109 bits (120), Expect = 6e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||| | || ||| | |||||||| ||||| || | || || || | Sbjct 305842 AAAGATGCAGATTTTCATCAAGACGTTAACGGGCAAGACCATTACGCTAGAAGTAGAGTC 305783 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC-GACAAAGAGGGCATCCCCGCGG 40804 | ||||| | | | | ||||| || || ||| ||||| || || || ||| | | Sbjct 305782 TAGCGACACCATTGAGGCTGTCAAGAGTAAGAT-CTCTGACAAGGAAGGAATTCCCCCTG 305724 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| || || ||||||| || ||||| ||||| ||||| | || || || ||||| Sbjct 305723 ACCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGACGATGGTCGTACTCTTTCCGACT 305664 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||| |||||| |||| |||||| Sbjct 305663 ACAACATCCAAAAGGAGTCCACTCTGCAT 305635 >seq274 Length=107525 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | ||||| || ||||| || || || ||| |||| || || | | Sbjct 42139 ATGCAGATCTTCATTAAAACCCTGACGGGTAAGACTATTACCCTCGAGGTGGAGTCGAGT 42080 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || ||| || ||||||||||| | |||||| Sbjct 42079 GACACCATCGAGGCTGTGAAGAGCAAGATCAGCGATAAGGAGGGCATCCCGCCTGACCAG 42020 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | |||||||| |||||||||| Sbjct 42019 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGATGATGGCCGCACCCTTTCCGACTACAAC 41960 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || || || Sbjct 41959 ATTCAGAAGGAGTCTACTCTTCA 41937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217300129200