Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06]
295 sequences; 9,369,115 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq285 219 4e-52
seq212 123 3e-23
seq295 109 6e-19
seq274 105 7e-18
>seq285
Length=150650
Score = 219 bits (242), Expect = 4e-52
Identities = 532/796 (67%), Gaps = 16/796 (2%)
Strand=Plus/Minus
Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707
||||| || ||||||||||| || ||||| | |||||| | ||||| ||||||||
Sbjct 139610 TACAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAAATTGACCTAGGTAAGGACACT 139551
Query 116708 AGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764
||||||||||| | ||||||| ||||| | | || | | || || ||
Sbjct 139550 CACGACTGGGAGCACAAGCTGAACGATGACGAGAGATACTTTGTGTCCCGTGTTCTTGCT 139491
Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824
|| || || || || || ||||| ||||| |||||||| || ||||| ||| | |||
Sbjct 139490 TTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGTGAG 139431
Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884
|| | ||||||| || ||||||||||| ||||| ||||| ||| | |||
Sbjct 139430 GTTGGTATTCCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATTCAC 139371
Query 116885 TCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT 116944
|| || | ||||| || || || || |||||| | | ||| || |
Sbjct 139370 TCTGAGACTTATTCTCTTCTGATTGATACATACGTGAAAGA--CAGTAAAGAGGCCGACT 139313
Query 116945 TT--GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGC 117002
|| ||| ||||||||| || || || | | | ||||||| ||||||| || |
Sbjct 139312 TTCTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCACTTC 139253
Query 117003 GCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062
| |||||| || | ||| | |||||| |||||||| | |||||||| || || |
Sbjct 139252 GTTGGATCAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTGTTG 139193
Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122
| || |||||||| ||| || || | || || ||||| || || || || ||||
Sbjct 139192 AAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGCTCA 139133
Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACT 117182
|||| || || |||||| |||||| || || || | || |||||| |||| ||| |
Sbjct 139132 TGCCTGGGCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCGATT 139073
Query 117183 TTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGA 117242
|||||||| | || |||| || ||| | | || || ||| || ||| | ||||
Sbjct 139072 TTGCCTGTCTCCTATTCAGCCACTTGCAGAACCGCCCTAGCCGTGCTATCGTT-GAGAGA 139014
Query 117243 -TCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGT 117301
|| |||| || || |||| ||| ||||| | | || ||| || |||| || ||
Sbjct 139013 ATCATCACTGAAGCCGTCGACATTGAGCAAGAATACTTCCGCGATGCTTTGCCTGTAAGT 138954
Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTG 117361
|| || || | || ||| ||| ||||| ||||||||||||||||| | ||
Sbjct 138953 CTTCTCGGCATGAACGCCGACCTCATGAACCAATATGTCGAGTTCGTCGCCGACCGTTTG 138894
Query 117362 CTGCTCGAGCTGGTCGGCGCCAAGC---ACTACAACACGCCCAACCCGCTGGACTTTATG 117418
||| | ||| | ||| ||||| |||||| | |||| ||| | |||||||||
Sbjct 138893 CTGTT--GGCT-TTGGGCCACAAGCGCGTCTACAATGTGACCAATCCGTTTGACTTTATG 138837
Query 117419 AACCTCATCTC-CTTG 117433
| |||||| ||||
Sbjct 138836 GAGAACATCTCTCTTG 138821
>seq212
Length=31356
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||| | || || |||||||| || || |||||| | || ||||| | | |
Sbjct 28052 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 28111
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| || || |||||| || ||||| || | ||||||
Sbjct 28112 GACACGATCGAGGCTGTGAAGAGCAAGATCAGCGACAAGGAAGGCATTCCGCCTGACCAG 28171
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| ||||| ||||| ||||| | ||||||||| |||||||||
Sbjct 28172 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAAC 28231
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||||||| ||||||| || | ||| | |||
Sbjct 28232 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGC 28267
>seq295
Length=432776
Score = 109 bits (120), Expect = 6e-19
Identities = 151/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||| ||||| || ||| | || ||| | |||||||| ||||| || | || || || |
Sbjct 305842 AAAGATGCAGATTTTCATCAAGACGTTAACGGGCAAGACCATTACGCTAGAAGTAGAGTC 305783
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC-GACAAAGAGGGCATCCCCGCGG 40804
| ||||| | | | | ||||| || || ||| ||||| || || || ||| | |
Sbjct 305782 TAGCGACACCATTGAGGCTGTCAAGAGTAAGAT-CTCTGACAAGGAAGGAATTCCCCCTG 305724
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
|||| || || ||||||| || ||||| ||||| ||||| | || || || |||||
Sbjct 305723 ACCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGACGATGGTCGTACTCTTTCCGACT 305664
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893
|||||||||| |||||| |||| ||||||
Sbjct 305663 ACAACATCCAAAAGGAGTCCACTCTGCAT 305635
>seq274
Length=107525
Score = 105 bits (116), Expect = 7e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||| | ||||| || ||||| || || || ||| |||| || || | |
Sbjct 42139 ATGCAGATCTTCATTAAAACCCTGACGGGTAAGACTATTACCCTCGAGGTGGAGTCGAGT 42080
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| || || ||| || ||||||||||| | ||||||
Sbjct 42079 GACACCATCGAGGCTGTGAAGAGCAAGATCAGCGATAAGGAGGGCATCCCGCCTGACCAG 42020
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| ||||| ||||| || || | |||||||| ||||||||||
Sbjct 42019 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGATGATGGCCGCACCCTTTCCGACTACAAC 41960
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||||||| | || || ||
Sbjct 41959 ATTCAGAAGGAGTCTACTCTTCA 41937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217300129200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |