Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq277 282 4e-71 seq285 140 3e-28 >seq277 Length=119773 Score = 282 bits (312), Expect = 4e-71 Identities = 641/958 (67%), Gaps = 16/958 (2%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||| || ||| | ||||| ||||||||| ||| Sbjct 80898 GAGGCAAGGTTGCACACAGCAGTCTCCTCAGGGGATGAATACTCAACAATTTCGCAACAC 80839 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 | |||| | ||| || || || | ||| |||||||||| || || ||| | |||| Sbjct 80838 AAATTGGAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 80779 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || |||||| ||| | ||| | || || ||| | Sbjct 80778 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGC 80719 Query 23207 GTCTGAGCGTGAAC---ACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262 ||||||| | | ||| || | | | || ||||| | | ||||| | ||| | Sbjct 80718 TTCTGAGCCTTTATGGTACGACGGCCCTTTCCAGCCTTTT----CATACTTCTCGTAAAG 80663 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || |||||||| | |||||| ||| || ||||| || ||| | || ||||| || Sbjct 80662 AGCCTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAG 80603 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| | || || ||||| |||| || ||||| || ||||| || || Sbjct 80602 TGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCAT 80543 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || ||||| ||||| | ||| || |||||| || || || || | |||||| Sbjct 80542 GAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTC 80483 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 ||||| || ||||||||||||||||||| | |||||| || || || | ||| || || Sbjct 80482 GAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCC 80423 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 || || ||||||||||| || |||||||||||||| | | ||| || | | || || Sbjct 80422 ACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATT 80363 Query 23563 GGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 || | ||| | || || || | | || || | || || | ||| || || | Sbjct 80362 CGAGGTTCCGTTCGTA--CCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTG 80305 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | || || || ||| | || ||||| || | |||||| |||||||| ||||| || Sbjct 80304 AGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATA 80245 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 ||||| || || || || | || | ||| ||||| ||| || | || || Sbjct 80244 CCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTGAGGCTTTGGA 80185 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 || | || | ||| || || |||||| || |||||| || ||||| || ||| Sbjct 80184 GTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTG 80125 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || || | | | ||||| || || || ||||| |||| ||||||||| ||| Sbjct 80124 TAAGTCTCTACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATC 80065 Query 23861 ATGTATTGAGGTCTCTC--GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 || | ||||| | ||| || | | || || | ||| | || || || || | | Sbjct 80064 ATATGCTGAGGGCGCTCGTGAACTT--TTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTA 80007 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 |||||| || |||||||||| || || ||||||||||| | || ||||| || || Sbjct 80006 GCGTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTT 79949 >seq285 Length=150650 Score = 140 bits (154), Expect = 3e-28 Identities = 367/553 (66%), Gaps = 13/553 (2%) Strand=Plus/Minus Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT-CT 57640 ||||| || || || || || |||||||| | ||| ||| | ||||| |||||| || Sbjct 139610 TACAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAAATTGACCTAGGTAAGGACACT 139551 Query 57641 GAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTG-- 57695 | ||| ||||| | || || || |||||| | ||| | | |||||| Sbjct 139550 CA-CGACTGGGAGCACAAGCTGAACGATGACGAGAGATACTTTGTGT--CCCGTGTTCTT 139494 Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 || || || || || ||||| ||||| || |||||| | || || |||| Sbjct 139493 GCTTTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGT 139434 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || || | | ||||| | ||| || ||||| || || | || |||||| | Sbjct 139433 GAGGTTGGTATTCCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATT 139374 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA--AC 57873 || || || | ||||| || || || ||||| |||||||| |||| | ||| || Sbjct 139373 CACTCTGAGACTTATTCTCTTCTGATTGATACATACGTGAAAGACAGTAAAGAGGCCGAC 139314 Query 57874 GTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAA 57933 | ||||||||||| ||| || || ||| | || ||||||||| ||||| || Sbjct 139313 TTT--CTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCAC 139256 Query 57934 TCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCG 57993 | ||||| | ||| | | || ||||| ||| | ||||| || ||||| || | Sbjct 139255 TTCGTTGGATCAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTG 139196 Query 57994 TCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053 | |||||| | ||||| ||| ||||| |||| || ||| |||| || || || | Sbjct 139195 TTGAAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGC 139136 Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113 | ||||| || || || || |||||| |||| |||||||| |||||| | || || | Sbjct 139135 TCATGCCTGGGCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCG 139076 Query 58114 ATTTTGCGTGCCT 58126 ||||||| || || Sbjct 139075 ATTTTGCCTGTCT 139063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764756236400