Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06]
295 sequences; 9,369,115 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq277 282 4e-71
seq285 140 3e-28
>seq277
Length=119773
Score = 282 bits (312), Expect = 4e-71
Identities = 641/958 (67%), Gaps = 16/958 (2%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| ||||| || || ||| || ||| | ||||| ||||||||| |||
Sbjct 80898 GAGGCAAGGTTGCACACAGCAGTCTCCTCAGGGGATGAATACTCAACAATTTCGCAACAC 80839
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
| |||| | ||| || || || | ||| |||||||||| || || ||| | ||||
Sbjct 80838 AAATTGGAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 80779
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | || |||||| ||| | ||| | || || ||| |
Sbjct 80778 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGC 80719
Query 23207 GTCTGAGCGTGAAC---ACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262
||||||| | | ||| || | | | || ||||| | | ||||| | ||| |
Sbjct 80718 TTCTGAGCCTTTATGGTACGACGGCCCTTTCCAGCCTTTT----CATACTTCTCGTAAAG 80663
Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
|| |||||||| | |||||| ||| || ||||| || ||| | || ||||| ||
Sbjct 80662 AGCCTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAG 80603
Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382
|||| | || || ||||| |||| || ||||| || ||||| || ||
Sbjct 80602 TGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCAT 80543
Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442
||| || ||||| ||||| | ||| || |||||| || || || || | ||||||
Sbjct 80542 GAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTC 80483
Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502
||||| || ||||||||||||||||||| | |||||| || || || | ||| || ||
Sbjct 80482 GAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCC 80423
Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562
|| || ||||||||||| || |||||||||||||| | | ||| || | | || ||
Sbjct 80422 ACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATT 80363
Query 23563 GGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620
|| | ||| | || || || | | || || | || || | ||| || || |
Sbjct 80362 CGAGGTTCCGTTCGTA--CCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTG 80305
Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680
| || || || ||| | || ||||| || | |||||| |||||||| ||||| ||
Sbjct 80304 AGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATA 80245
Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740
||||| || || || || | || | ||| ||||| ||| || | || ||
Sbjct 80244 CCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTGAGGCTTTGGA 80185
Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800
|| | || | ||| || || |||||| || |||||| || ||||| || |||
Sbjct 80184 GTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTG 80125
Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860
|| || || | | | ||||| || || || ||||| |||| ||||||||| |||
Sbjct 80124 TAAGTCTCTACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATC 80065
Query 23861 ATGTATTGAGGTCTCTC--GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918
|| | ||||| | ||| || | | || || | ||| | || || || || | |
Sbjct 80064 ATATGCTGAGGGCGCTCGTGAACTT--TTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTA 80007
Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|||||| || |||||||||| || || ||||||||||| | || ||||| || ||
Sbjct 80006 GCGTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTT 79949
>seq285
Length=150650
Score = 140 bits (154), Expect = 3e-28
Identities = 367/553 (66%), Gaps = 13/553 (2%)
Strand=Plus/Minus
Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT-CT 57640
||||| || || || || || |||||||| | ||| ||| | ||||| |||||| ||
Sbjct 139610 TACAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAAATTGACCTAGGTAAGGACACT 139551
Query 57641 GAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTG-- 57695
| ||| ||||| | || || || |||||| | ||| | | ||||||
Sbjct 139550 CA-CGACTGGGAGCACAAGCTGAACGATGACGAGAGATACTTTGTGT--CCCGTGTTCTT 139494
Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755
|| || || || || ||||| ||||| || |||||| | || || ||||
Sbjct 139493 GCTTTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGT 139434
Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815
|| || | | ||||| | ||| || ||||| || || | || |||||| |
Sbjct 139433 GAGGTTGGTATTCCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATT 139374
Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA--AC 57873
|| || || | ||||| || || || ||||| |||||||| |||| | ||| ||
Sbjct 139373 CACTCTGAGACTTATTCTCTTCTGATTGATACATACGTGAAAGACAGTAAAGAGGCCGAC 139314
Query 57874 GTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAA 57933
| ||||||||||| ||| || || ||| | || ||||||||| ||||| ||
Sbjct 139313 TTT--CTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCAC 139256
Query 57934 TCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCG 57993
| ||||| | ||| | | || ||||| ||| | ||||| || ||||| || |
Sbjct 139255 TTCGTTGGATCAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTG 139196
Query 57994 TCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053
| |||||| | ||||| ||| ||||| |||| || ||| |||| || || || |
Sbjct 139195 TTGAAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGC 139136
Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113
| ||||| || || || || |||||| |||| |||||||| |||||| | || || |
Sbjct 139135 TCATGCCTGGGCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCG 139076
Query 58114 ATTTTGCGTGCCT 58126
||||||| || ||
Sbjct 139075 ATTTTGCCTGTCT 139063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764756236400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |