Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq277 237 2e-57 seq285 190 3e-43 >seq277 Length=119773 Score = 237 bits (262), Expect = 2e-57 Identities = 711/1079 (66%), Gaps = 34/1079 (3%) Strand=Plus/Minus Query 71775 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 71834 |||||||||||| | ||| | || || ||||| ||| |||||||| || || || Sbjct 80827 CTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCAT 80768 Query 71835 AAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCT 71893 || || ||||||| || |||||| || | ||| || | ||| | | || |||||| Sbjct 80767 GAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAA-GCTTCTGAGCCT 80709 Query 71894 TTATTATATTCTTGTATCTCTTTTCTC---TTTCGTA-TTGT-GTATATAATCGTTCGAA 71948 |||| || | | |||| | |||| || || | ||| | | | || || Sbjct 80708 TTATGGTACGACGG---CCCTTTCCAGCCTTTTCATACTTCTCGTAAAGAGCC--TCAAA 80654 Query 71949 CTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC 72008 || ||||| || | | | | ||||| ||||| || || ||||| | || ||| || Sbjct 80653 TTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGTCCAATC 80594 Query 72009 TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 72068 |||| | || || || ||||| || ||||| ||||||||||| || || || ||||| Sbjct 80593 AGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAAAAGATC 80534 Query 72069 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 72128 | | | | ||| || || || ||| || || |||| || | | | ||| Sbjct 80533 GCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGAACACATC 80474 Query 72129 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATC 72188 ||||||||| || | ||| ||||| | | || || || ||||| || || || || Sbjct 80473 GTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCACCTTGGTC 80414 Query 72189 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 72248 | ||| | ||| ||||| || || || | |||||| |||| ||| ||||| || | || Sbjct 80413 GACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTCGAGGTTCC 80354 Query 72249 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATT 72306 || || || | ||||| ||| | || || || | ||| | || || || || Sbjct 80353 GTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTG--AGCCCAATC 80296 Query 72307 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 72366 || || || || ||||| | ||||| | || | ||||| || || ||||| ||| Sbjct 80295 CCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATACCCTCAATA 80236 Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTGACGACTAGTTCCCGC 72425 ||| ||| ||||||| | || || || | || ||| || | |||||| || Sbjct 80235 GAATCGTCCTTCATGTTTACGAGGAAGCA-CGAGCTCATCTGAGGCTTTGGAGTTCCTGC 80177 Query 72426 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 72485 ||| | ||||| || || ||||| || || |||| | |||| || ||||| ||||| Sbjct 80176 ATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGTAAGTCTC 80117 Query 72486 AATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGC 72543 | || || ||| ||| | ||| || || | | ||| ||||| | ||||||| Sbjct 80116 TACGACT--TTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATCATATGC 80059 Query 72544 TGAGGTCTTTCAACGATCTTGT-TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602 ||||| | || || ||| | ||||| ||||| ||||||||| || | ||||| Sbjct 80058 TGAGGGCGCTC-GTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTAGCGTTTT 80000 Query 72603 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 ||||||||||||||||| ||||| || || |||| || | || ||||| | || Sbjct 79999 GAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTTGAGCTCTTC 79940 Query 72663 CTTATATTTGTTAACTATATCCATGGTGATACTT-----GAAATAATCGGAGAATGTTTC 72717 || || | || | | | || |||| | ||||| || |||||||| || Sbjct 79939 AGCATGCTTCTGGACAA----CGTCGT-ATACCTCTTGGGAAATCATTGGAGAATGCTTG 79885 Query 72718 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 72777 |||| |||||| |||||| ||| | |||||| || || | || || | ||||||| Sbjct 79884 TCATTGCGAGGATTCACATAGCGGAAAAGATCCTCAATGACCTGGCTGAACACTTTTTTT 79825 Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || | ||||| ||||| || || || |||| || || || |||||| || || || Sbjct 79824 GTCTGTTTGTGGAGATTAGACACTGCAATTCGTGCAGCAAGCTGGGCATAGTCAGGGTG 79766 >seq285 Length=150650 Score = 190 bits (210), Expect = 3e-43 Identities = 574/878 (65%), Gaps = 10/878 (1%) Strand=Plus/Plus Query 41789 ACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 41848 |||||||| || || ||||| |||||||| | | || || || ||||| || |||||| Sbjct 138790 ACACGTTTCTCAAAGAAATTGGTCTTTCCAGCAAGAGAGATGTTCTCCATAAAGTCAAAC 138849 Query 41849 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATG 41908 |||||||| ||||| || | || ||||| | | | ||| | || |||| | Sbjct 138850 GGATTGGTCACATTGTAGACGCGCTTGTGGCCCAAAGCCAACAGCAAACGGTCGGCGACG 138909 Query 41909 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 41968 || || | |||| ||||| | || ||||| || | ||| | || || | ||| Sbjct 138910 AACTCGACATATTGGTTCATGAGGTCGGCGTTCATGCCGAGAAGACTTACAGGCAAAGCA 138969 Query 41969 ACA-GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC 42027 | | ||| | |||||| ||||| ||| || || || || || ||| | | | Sbjct 138970 TCGCGGAAGTA-TTCTTGCTCAATGTCGACGGCTTCAGTGATGATTC-TCTCAACGATAG 139027 Query 42028 TTCA-CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGAC 42086 | || || | | | || || | || | | ||| || |||||| ||||| || Sbjct 139028 CACGGCTAGGGCGGTTCTGCAAGTGGCTGAATAGGAGACAGGCAAAATCGGTGTGCATAC 139087 Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| | ||| | ||||||||| || || || || ||||| || |||||||||| Sbjct 139088 CCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAGCCCAGGCATGAGCCCACGCTTTT 139147 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || ||| ||||||| ||||| || || || |||| Sbjct 139148 TCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAAGACACCTTCAACAGCAGCGAAGG 139207 Query 42207 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 |||| || | |||| | | | || ||| ||||| | ||||| | | Sbjct 139208 CAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCTGATCCAACGAAGTGCCCACTTAG 139267 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 42323 ||||||| | | || || || ||||| || || ||| ||| || |||| Sbjct 139268 CCTTCTTGCGAATGGAGGGAATGGTGAAGATGGCGTTGAACAGAAAGTCGGCCTCTTTAC 139327 Query 42324 TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGG 42383 | ||||| || |||||||| |||| |||| ||| | || || ||||||||||| || Sbjct 139328 TGTCTTTCACGTATGTATCAATCAGAAGAGAATAAGTCTCAGAGTGAATGTTTTCCATCA 139387 Query 42384 CCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTT 42443 ||||| || |||||||||||| ||||||||| || || || || ||||| | Sbjct 139388 TAATCTGGAAGCCGTAGAAACATTTGGCCTCGGGAATACCAACCTCACCACTGAATCGCT 139447 Query 42444 CAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 42503 || | | ||| || || || || || ||||| || ||||| || || | ||| | | Sbjct 139448 CAACGAGATTCTCATTGACAATGCCATCACTAGCAGCAAAGAAAGCAAGAACACGGGACA 139507 Query 42504 TAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAATCATTGATATCTTTAGATATAT 42560 ||| ||| | ||||| || | | | | ||| || | | || ||| || | Sbjct 139508 CAAAGTATCTCTCGTCATCGTTCAGCTTGTGCTCCCAGTCGTGAGTGTCCTTACCTAGGT 139567 Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCAT 42620 | | ||| || ||||||||||||| || || || || || || | ||| || | Sbjct 139568 CAATTTCCTCGGCCGTCCAAAATGACGCCTCGGCTTTCTTGTAAGCCTGCCAAATCGAGT 139627 Query 42621 GATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 || | || ||||| | |||||| | ||||||||| Sbjct 139628 TGTACTTGATCGGGAACAAAACAAACCGGTTTGGATTT 139665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136725174200