Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq277 318 2e-81 seq285 111 4e-19 >seq277 Length=119773 Score = 318 bits (352), Expect = 2e-81 Identities = 652/956 (68%), Gaps = 30/956 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| |||| || |||||||||| ||||||| || || |||||| || Sbjct 80147 TTCACCCACGCCTCGCCCACCTTGTACAATGCAGGAACTCCAAAGCCTCAGATGAGCTCG 80206 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || |||| |||||||||||||| || |||||||| | || || || |||| Sbjct 80207 TGCTTCCTCGTAAACATGAAGGACGATTCTATTGAGGGTATTTACGATACTCTGAAGAGC 80266 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || || || || || ||| ||| || || ||||| | | || || | || || Sbjct 80267 TGCGCGCTCATCTCGAAGTCTGCCGGTGGGATTGGGCTCAGTGTGCATAACATCCGCGCT 80326 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | || || || || ||| |||||||||| | |||||||| | || Sbjct 80327 ACTGG-CTCATATATAGCTGGTACGAACGGAACCTCGAATGGGATTCTTCCCATGTTGCG 80385 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||||| |||| ||||| | ||||||||||| ||||| ||||| || || || Sbjct 80386 TGTGTACAACAACACTGCTCGTTACGTCGACCAAGGTGGGAACAAGCGTCCTGGTGCCTT 80445 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || || |||||||| |||| |||| | || || ||| | || || || ||||| Sbjct 80446 TGCCATCTACCTCGAGCCGTGGCATGACGATGTGTTCGACTTTATCGACCTGCGCAAAAA 80505 Query 363906 -CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||||| || ||||| ||| || ||||| ||||| ||| || |||||| || | || Sbjct 80506 TCACGGCAAGGAAGAG--ATT-CGCGCACGCGATCTTTTCATGGCCCTTTGGATTCCCGA 80562 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 | || ||||||||||| | || | | ||||| |||| | ||||| ||||||| Sbjct 80563 TCTGTTCATGAAGCGCGTCAAAGCGGATGCTGATTGGACACTTATGTGCCCCAACGAATG 80622 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || ||| | || || | || || || | || ||||| ||||| ||||||||| Sbjct 80623 CCCTGGCCTTGCTGACGTTTACGGAGATGAATTTGAGGCTCTTTACGAGAAGTATGAAAA 80682 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 || ||||||| ||| || || || |||||||| |||| || || | || | Sbjct 80683 GGCTGGAAAGGGCCGTCGTACCATAAAGGCTCAGAAGCTTTGGTACGCTATTCTTGAGGC 80742 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| ||||| || | |||| ||| | ||||| ||| | |||||||||| ||| Sbjct 80743 TCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAA 80802 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAG---CAACCTATGTACCGAGATTATTGAATA 364259 |||| || | ||||| || | ||| |||| ||| | ||| ||| ||| |||| || Sbjct 80803 CCAGAAGAATCTTGGAACCA-TCA--AGAGCTCCAATTTGTGTTGCGAAATTGTTGAGTA 80859 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | | || || |||||||| || || |||||||| || | || || || || ||| | Sbjct 80860 TTCATCCCCTGAGGAGACTGCTGTGTGCAACCTTGCCTCTGTAGCCCTCCCTGCTTTTAT 80919 Query 364320 AA---------AAGATG--GTAC-TTTTGACCACCAGCATCTTTATGACGTAACCTA--T 364365 | |||||| |||| |||||| | || |||| | ||| | | | Sbjct 80920 TAAAACGCAGGAAGATGGAGTACAGTTTGACTTCAAGAGTCTTCACAGCGTTGTCAAGGT 80979 Query 364366 CATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCC 364425 || |||| | || | |||| | |||||||| || ||||| ||| ||||||| || Sbjct 80980 GAT--TACTCGGAACTTGAACAACATCATCGACAAAAACTATTACCCAGTTCCTGAGGCT 81037 Query 364426 GAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 | ||||| |||||||||||||| |||| || ||||| || || || ||||| Sbjct 81038 CGTCTGTCTAACATGCGTCATCGCCCCATTGCCCTGGGTGTCCAAGGTCTTGCTGA 81093 >seq285 Length=150650 Score = 111 bits (122), Expect = 4e-19 Identities = 247/368 (67%), Gaps = 11/368 (3%) Strand=Plus/Minus Query 22291 CCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACA 22350 || ||||||| ||||||||| || | || || ||||| ||||| ||||| | || || Sbjct 139421 CCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATTCACTCTGAGACT 139362 Query 22351 TATTCTATGATGCTACAGTCACTCGTAGAAGA---TAAAGACGAACAACGAAACT-TATT 22406 |||||| | || | | || ||| |||| |||||| | ||| | | || Sbjct 139361 TATTCTCTTCTGATTGATACATACGTGAAAGACAGTAAAGAGGC----CGACTTTCTGTT 139306 Query 22407 CCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT 22466 | ||| || |||||||| || ||| || ||||| | ||||| || ||||| Sbjct 139305 CAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCACTTCGTTGGAT 139246 Query 22467 GAACAA---TGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCAT 22523 | | | ||| | | ||||| || || || ||||| || |||| |||||||| | Sbjct 139245 CAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTGTTGAAGGTGT 139186 Query 22524 TTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGG 22583 ||||| ||| | ||| ||||||| ||||| ||||| |||| | ||||| || Sbjct 139185 CTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGCTCATGCCTGG 139126 Query 22584 TCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || || || || || || | ||| || ||||||||| | || ||||||||||| || Sbjct 139125 GCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCGATTTTGCCTG 139066 Query 22644 TATGCTAT 22651 | | |||| Sbjct 139065 TCTCCTAT 139058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348673730690