Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq212 183 6e-41 seq295 165 2e-35 seq274 131 3e-25 seq253 123 5e-23 >seq212 Length=31356 Score = 183 bits (202), Expect = 6e-41 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| ||||||||||| || |||||||| || || ||| Sbjct 28278 CCACCACGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAG 28219 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || ||| Sbjct 28218 AGGGTGCGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGA 28159 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| ||||| ||| || |||||||| ||||| ||| || || || Sbjct 28158 ATGCCTTCCTTGTCGCTGATCTTGCTCTTCACAGCCTCGATCGTGTC-GCTAGACTCGAC 28100 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||| ||| |||||||| Sbjct 28099 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCAT 28052 >seq295 Length=432776 Score = 165 bits (182), Expect = 2e-35 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 |||| || || || || || | ||||| || || |||||||| ||||||||||| || | Sbjct 305607 AATTGCCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGT 305666 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 |||| || || | ||||| || | |||||| || || || ||||| | |||||||| | Sbjct 305667 CGGAAAGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAG 305726 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GAT 68408 | ||||| ||||||||||| ||||| |||||| ||||| |||||||| ||| || Sbjct 305727 GGGGAATTCCTTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTC-GCTAGAC 305785 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| | || ||||| || ||||| | ||||||| ||| |||||||| Sbjct 305786 TCTACTTCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCAT 305838 >seq274 Length=107525 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || || ||||| || ||||| Sbjct 41913 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAA 41972 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 41973 AGGGTGCGGCCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 42032 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || ||||| ||| || |||||||||||||| || || || Sbjct 42033 ATGCCCTCCTTATCGCTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACC 42092 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || ||||| ||||| || | ||| |||||||| Sbjct 42093 TCGAGGGTAATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCAT 42139 >seq253 Length=72852 Score = 123 bits (136), Expect = 5e-23 Identities = 663/1039 (64%), Gaps = 39/1039 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | | || ||| |||||| |||||| || || ||| ||| || Sbjct 21459 CGCCACTGGATGTACTCGCTAGGAGTCTTGTCCAAGTGGTTATCGATGTGGGCGAATGCG 21400 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| ||||| || || || ||| || | | || || || || Sbjct 21399 TGCTGCTTGACGTAGGCGATACGGCAGTTCTCGTGAGTGTAGACCTCACCATTGGTAGGC 21340 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| || || || |||| ||| || ||||| ||||||||||| Sbjct 21339 AAAAGCTCACCAGTGAGGACGTTAATTAGAGTAGACTTACCGGCACCGTTGGGGCCAATG 21280 Query 225161 ACGCCAATCCGGGATGA-------CATTGCAACCTGCGAGTTCACGTTG-CTGAAGATCT 225212 || |||| ||||| || || || || || || || ||| ||| | | Sbjct 21279 ACAGCAATACGGGAGGAGAGAGAGCACTGGAA--TGAGATATC-CGTGATCTGTGGCTTC 21223 Query 225213 CAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGG 225272 ||| | | |||| || | || | | ||| | ||| || | ||||| Sbjct 21222 GAGGTACC--TGGGTACTGGAATGTGACATTAGAAACCTTGACGATAGCCTTCTGCTTGG 21165 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCA 225332 | | |||||| ||||| || ||||| ||||| || | || | | | | | | Sbjct 21164 TCTTGACACCCTCGAGGAAACCAGGCTCAGGGAAATCGAAGTTAACCTCGGAGGCACCAA 21105 Query 225333 GGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 | ||| |||||||| |||| | |||| ||| || || | | ||||| |||| Sbjct 21104 GCTCGAAGTAAGATTTGGCAGGC--GGGTA-CTTCTTGACAAACTCTGTAAGGTTGCCGA 21048 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAA 225449 || ||| |||||||| ||||| | || ||| | | | | | || ||| | Sbjct 21047 TGTACTTGTGGAGCTTGAAGTTCTGGTAGT--TGATGATGTACTGGGTGACCTT-GTCCA 20991 Query 225450 GGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCG 225509 |||||| ||||||||||||||||||||||| | | | | || | ||||||| Sbjct 20990 AGAAGCCGGAGTCGTGGGACACAATGATGGAGGTAA--TACCACAAGTG-TTGAGGTAGT 20934 Query 225510 TGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGA 225569 ||| | ||| || |||||| |||| |||||||||||| || |||| ||||| | Sbjct 20933 TGACCAACCAGGCGACGTTGACAGTATCCAAGTGGTTTGTAGGCTCATCCAAAAGCAAAA 20874 Query 225570 TGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACA 225629 | ||||| | | || | || | |||| |||||||| ||||| || || || | Sbjct 20873 TATCAGCCTTACGAAGCACAGCAGTGGCAAGAGCAAGCTTCATCTTCCAACCACCAGAAA 20814 Query 225630 GGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGTACTCCAGGAGCGTCT 225686 | ||| ||| | || || || | || ||||| |||||| | || |||| | Sbjct 20813 GAGAGGTGATAGG--CATAGCGCACATCT-CGTCAGTAAAGCCGAATTCGTTGAGCTTGG 20757 Query 225687 GGATAATGCGCTCGGGAGAGCTGCGAGCGGCAAC-GTTGGGGTCGGACGAGAGGTAATCA 225745 | || ||| | || ||| | ||| | | | || | | || ||| ||| Sbjct 20756 CGTGAACCTCCTCCTTGGGGC--CGA-CAGCATCTGCAGCAGT-GATCATGACGTAGTCA 20701 Query 225746 TATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGC 225805 ||| | |||| ||| || | ||||| || || || || || || ||| |||| Sbjct 20700 AGAACGTTGGTGTCGGAGTGAGTTCCATCAATATCATGCTCAACATAGACAGTCTTGAGC 20641 Query 225806 TGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTC 225865 | | | |||||||||||| | |||||| | ||||| ||||| | || || | Sbjct 20640 TCGT---CGTTGGGGAAGCCCTCAACCTGGCCCTCAGCAATGGCACGCATAAGAGTGGAC 20584 Query 225866 TTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGC 225925 || || || |||||||| || | |||||| || |||||||| | | | Sbjct 20583 TTACCAGCACCGTTGGGTCCACACAAGCCGTATCGACGGTTGCGCTTGAGGCGCATCTGA 20524 Query 225926 GTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCC 225985 || |||||| || ||||| |||||||||| || ||||||||||| | ||| || ||| Sbjct 20523 GTACGGTTCAGCAGAATCTTAGCACCATAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 20464 Query 225986 TCACCCTCCTCGGTCTCCT 226004 ||||||||||| ||||| Sbjct 20463 TCACCCTCCTCATCCTCCT 20445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619001517400