Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06]
295 sequences; 9,369,115 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq212 107 5e-18
seq295 95.1 3e-14
seq274 93.3 1e-13
seq54 89.7 1e-12
>seq212
Length=31356
Score = 107 bits (118), Expect = 5e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | || | |||| || || ||||| || ||||| | |
Sbjct 28278 CCACCACGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAG 28219
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||||||||| || | ||
Sbjct 28218 AGGGTGCGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGA 28159
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| || || ||| || ||| ||||| || || | ||||| || || ||
Sbjct 28158 ATGCCTTCCTTGTCGCTGATCTT-GCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGAC 28100
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| |||||||| || || ||||||| ||| ||||||||
Sbjct 28099 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCAT 28052
>seq295
Length=432776
Score = 95.1 bits (104), Expect = 3e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | || || | ||| | ||| || |||||||| || |||||||
Sbjct 305612 CCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 305671
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || ||||| ||||||||||| | ||
Sbjct 305672 AGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGA 305731
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || || ||| || || || || || | ||||| || ||||||
Sbjct 305732 ATTCCTTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACT 305791
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || ||||| || || | ||||||| ||| ||||||||
Sbjct 305792 TCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCAT 305838
>seq274
Length=107525
Score = 93.3 bits (102), Expect = 1e-13
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | |||| || || || || || || |||||||
Sbjct 41913 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAA 41972
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||||||||| || | |||
Sbjct 41973 AGGGTGCGGCCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 42032
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| || || ||||| ||| || ||| ||||| || || | || ||||| || ||
Sbjct 42033 ATGCCCTCCTTATCGCTGATCTT-GCTCTTCACAGCCTCGATGGTGTCACTCGACTCCAC 42091
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || ||||| || ||||| || || | ||| ||||||||
Sbjct 42092 CTCGAGGGTAATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCAT 42139
>seq54
Length=1817
Score = 89.7 bits (98), Expect = 1e-12
Identities = 109/142 (77%), Gaps = 5/142 (4%)
Strand=Plus/Plus
Query 207839 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 207894
|||||||||||||||| |||||| || | ||| | || |||||||| ||| | | ||
Sbjct 1554 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 1613
Query 207895 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 207953
| |||| ||| | | |||||||||| | ||||||| ||||||||||| || |
Sbjct 1614 TTAACTCGGCCACCGACTGTGTTTCCACGCCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 1673
Query 207954 CCGCAATTTGACAGTGTCGCAA 207975
||||||||||| ||||||||||
Sbjct 1674 CCGCAATTTGATAGTGTCGCAA 1695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179649941275010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |