Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq212 107 5e-18 seq295 95.1 3e-14 seq274 93.3 1e-13 seq54 89.7 1e-12 >seq212 Length=31356 Score = 107 bits (118), Expect = 5e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | |||| || || ||||| || ||||| | | Sbjct 28278 CCACCACGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAG 28219 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || | || Sbjct 28218 AGGGTGCGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGA 28159 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || ||| || ||| ||||| || || | ||||| || || || Sbjct 28158 ATGCCTTCCTTGTCGCTGATCTT-GCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGAC 28100 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| || || ||||||| ||| |||||||| Sbjct 28099 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCAT 28052 >seq295 Length=432776 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || | ||| | ||| || |||||||| || ||||||| Sbjct 305612 CCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 305671 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||| ||||||||||| | || Sbjct 305672 AGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGA 305731 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||| || || || || || | ||||| || |||||| Sbjct 305732 ATTCCTTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACT 305791 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| || || | ||||||| ||| |||||||| Sbjct 305792 TCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCAT 305838 >seq274 Length=107525 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || || || || || || ||||||| Sbjct 41913 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAA 41972 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || | ||| Sbjct 41973 AGGGTGCGGCCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 42032 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || ||||| ||| || ||| ||||| || || | || ||||| || || Sbjct 42033 ATGCCCTCCTTATCGCTGATCTT-GCTCTTCACAGCCTCGATGGTGTCACTCGACTCCAC 42091 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || ||||| || || | ||| |||||||| Sbjct 42092 CTCGAGGGTAATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCAT 42139 >seq54 Length=1817 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 207839 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 207894 |||||||||||||||| |||||| || | ||| | || |||||||| ||| | | || Sbjct 1554 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 1613 Query 207895 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 207953 | |||| ||| | | |||||||||| | ||||||| ||||||||||| || | Sbjct 1614 TTAACTCGGCCACCGACTGTGTTTCCACGCCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 1673 Query 207954 CCGCAATTTGACAGTGTCGCAA 207975 ||||||||||| |||||||||| Sbjct 1674 CCGCAATTTGATAGTGTCGCAA 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649941275010