Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq54 89.7 1e-12 seq253 87.8 4e-12 >seq54 Length=1817 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 183641 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 183696 |||||||||||||||| |||||| || | ||| | || |||||||| ||| | | || Sbjct 1554 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 1613 Query 183697 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 183755 | |||| ||| | | |||||||||| | ||||||| ||||||||||| || | Sbjct 1614 TTAACTCGGCCACCGACTGTGTTTCCACGCCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 1673 Query 183756 CCGCAATTTGACAGTGTCGCAA 183777 ||||||||||| |||||||||| Sbjct 1674 CCGCAATTTGATAGTGTCGCAA 1695 >seq253 Length=72852 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||| ||| || | |||| || ||||| ||||| || ||||| || || Sbjct 20632 GGGGAAGCCCTCAACCTGGCCCTCAGCAATGGCACGCATAAGAGTGGACTTACCAGCACC 20573 Query 334241 GTTTGGCCCACACAGACCGTAGCG--GTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||| || ||||||| ||||| || | || | |||| || | | | ||| |||| Sbjct 20572 GTTGGGTCCACACAAGCCGTATCGACGGTTGC--GCTTGAGGCGCATCTGAGTACGGTTC 20515 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || ||||| || ||||||| || || || || || || | || ||||||||||| Sbjct 20514 AGCAGAATCTTAGCACCATAGGCGAGCGAGAACTCGCAGTTGCAGAGATCCTCACC 20459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875831458250