Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq277 201 1e-46 >seq277 Length=119773 Score = 201 bits (222), Expect = 1e-46 Identities = 603/932 (65%), Gaps = 24/932 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 |||||| | || |||| |||||||| || ||| || ||| | || || | |||| Sbjct 79979 AATTACAACTATTTTGGTTTCAAAACGCTAGAGCGCTCCTACTTGCTGAAACTAAATGGA 80038 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| |||||| || || || || | ||||||||| |||| || ||||| ||| | Sbjct 80039 AAAGTTCACGAGCGCCCTCAGCATATGATCATGCGCGTCTCCATTGGTATTCATGGCGAT 80098 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| || || || | | ||| || ||| |||| | ||| ||| Sbjct 80099 GACATACCCAAAGTCGTAGAGACTTACAACCTTATGTCCAACAAATACTTCACCCACGCC 80158 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || ||| ||| ||| || || || || ||| |||||| ||||| ||||| | Sbjct 80159 TCGCCCACCTTGTACAATGCAGGAACTCCAAAGCCTCAGATGAGCTCGTGCTTCCTCGTA 80218 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | |||| ||| || || || |||| ||| | || ||| ||| ||| |||| Sbjct 80219 AACATGAAGGACGATTCTATTGAGGGTATTTACGATACTCTGAAGAGCTGCGCGCTCATC 80278 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || | || || || || ||| ||||||| || || | || || | || || || Sbjct 80279 TCGAAGTCTGCCGGTGGGATTGGGCTCAGTGTGCATAACATCCGCGCTACTGGCTCATAT 80338 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||||| || || ||||| || || | | || ||| | || || | ||||||| Sbjct 80339 ATAGCTGGTACGAACGGAACCTCGAATGGGATTCTTCCCATGTTGCGTGTGTACAACAAC 80398 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || ||||| ||||| ||||| | | | ||| | || || |||| ||| Sbjct 80399 ACTGCTCGTTACGTCGACCAAGGTGGGAACAAGCGTCCTGGTGCCTTTGCCATCTACCTC 80458 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| ||||| | || ||| | || ||||||||||| || || |||||||| || Sbjct 80459 GAGCCGTGGCATGACGATGTGTTCGACTTTATCGACCTGCGCAAAAATCACGGCAAGGA- 80517 Query 94255 CTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 |||| | || | || || ||| || || ||| | || || || || ||||| Sbjct 80518 --AGAGATTCGCGCACGCGATCTTTTCATGGCCCTTTGGATTCCCGATCTGTTCATGAAG 80575 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 |||||| | | | | |||| ||| | || ||||| ||||| || || || | Sbjct 80576 CGCGTCAAAGCGGATGCTGATTGGACACTTATGTGCCCCAACGAATGCCCTGGCCTTGCT 80635 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 ||||||| ||| || || || | |||| |||||| | | | ||||| Sbjct 80636 GACGTTTACGGA---------GATGAATTTGAGGCTCTTTACGAGAAGTATGAAAAGGCT 80686 Query 94432 AGGAAGG---------TTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAG 94482 | |||| || | ||| |||||| ||| | || | || | ||| Sbjct 80687 GGAAAGGGCCGTCGTACCATAAAGGCTCAGAAGCTTTGGTACGCTATTCTTGAGGCTCAG 80746 Query 94483 GTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAG 94542 ||||| |||| |||| ||| | | |||||| ||| |||| |||| ||||||| Sbjct 80747 ACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAG 80806 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 || | || || ||||||||||| ||| |||| ||| ||||| |||||| | || Sbjct 80807 AAGAATCTTGGAACCATCAAGAGCTCCAATTTGTGTTGCGAAATTGTTGAGTATTCATCC 80866 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634 || || |||| ||||||||| ||||| | ||| Sbjct 80867 CCTGAGGAGACTGCTGTGTGCAACCTTGCCTC 80898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721375708200