Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06]
295 sequences; 9,369,115 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq212 123 6e-23
seq295 109 1e-18
seq274 109 1e-18
>seq212
Length=31356
Score = 123 bits (136), Expect = 6e-23
Identities = 153/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | |||||| || |||||||| |||| ||||||||||| | ||
Sbjct 28272 CGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 28213
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| ||||||||||| |||||||||||||| || ||| |||
Sbjct 28212 CGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 28153
Query 199529 T-CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
| || | ||| ||||| |||||| | |||| ||||| | | || || || |
Sbjct 28152 TCCTTGTCGCTG-ATCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAG 28094
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTT 199614
||||| ||||| |||||||| || ||
Sbjct 28093 GGTGATAGTCTTCCCCGTGAGGGTCTT 28067
>seq295
Length=432776
Score = 109 bits (120), Expect = 1e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| ||||| ||||||||||||| ||||||||| | | ||| | ||||| || ||||||
Sbjct 305636 TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTCAAGCTGC 305695
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || || |||||||||||||| ||||| || ||||||||| || |||||
Sbjct 305696 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGAGATCTTA 305755
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || | || | |||||| | | ||||| || | ||| || ||||| |||||
Sbjct 305756 CTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTTGCCCGTT 305815
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| || || | ||||| ||
Sbjct 305816 AACGTCTTGATGAAAATCTG 305835
>seq274
Length=107525
Score = 109 bits (120), Expect = 1e-18
Identities = 145/201 (72%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| ||||| |||||||| || | ||||||||| | | || | |||||
Sbjct 41928 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCA 41987
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT----TCCTTCTCG 199533
|| |||||||| ||||||||||| |||||||||||||| || || ||||| |||
Sbjct 41988 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCG 42047
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|| ||||| |||||| | |||| |||||| | | || || || | || ||
Sbjct 42048 CT----GATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAAT 42103
Query 199594 CGTCTTACCCGTGAGAGTTTT 199614
||||||||||| || |||||
Sbjct 42104 AGTCTTACCCGTCAGGGTTTT 42124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178917144044765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |