Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq212 123 6e-23 seq295 109 1e-18 seq274 109 1e-18 >seq212 Length=31356 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 28272 CGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 28213 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| |||||||||||||| || ||| ||| Sbjct 28212 CGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 28153 Query 199529 T-CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 | || | ||| ||||| |||||| | |||| ||||| | | || || || | Sbjct 28152 TCCTTGTCGCTG-ATCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAG 28094 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTT 199614 ||||| ||||| |||||||| || || Sbjct 28093 GGTGATAGTCTTCCCCGTGAGGGTCTT 28067 >seq295 Length=432776 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| ||||||||||||| ||||||||| | | ||| | ||||| || |||||| Sbjct 305636 TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTCAAGCTGC 305695 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || |||||||||||||| ||||| || ||||||||| || ||||| Sbjct 305696 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGAGATCTTA 305755 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || | || | |||||| | | ||||| || | ||| || ||||| ||||| Sbjct 305756 CTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTTGCCCGTT 305815 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || | ||||| || Sbjct 305816 AACGTCTTGATGAAAATCTG 305835 >seq274 Length=107525 Score = 109 bits (120), Expect = 1e-18 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| |||||||| || | ||||||||| | | || | ||||| Sbjct 41928 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCA 41987 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT----TCCTTCTCG 199533 || |||||||| ||||||||||| |||||||||||||| || || ||||| ||| Sbjct 41988 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCG 42047 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| |||||| | |||| |||||| | | || || || | || || Sbjct 42048 CT----GATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAAT 42103 Query 199594 CGTCTTACCCGTGAGAGTTTT 199614 ||||||||||| || ||||| Sbjct 42104 AGTCTTACCCGTCAGGGTTTT 42124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178917144044765