Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06]
295 sequences; 9,369,115 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq274 147 2e-30
seq212 143 3e-29
seq295 132 5e-26
>seq274
Length=107525
Score = 147 bits (162), Expect = 2e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| || | ||| |||||| || || ||||||||||| || ||||| |
Sbjct 41924 ACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCC 41983
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||||||||| |||| ||||||||||| | ||| | || ||||||
Sbjct 41984 ATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 42043
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|| ||||||| |||| | | | | | ||||| ||||| ||||| || | || ||
Sbjct 42044 ATCGCTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAAT 42103
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||||||| ||||||| ||||| |||||
Sbjct 42104 AGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCAT 42139
>seq212
Length=31356
Score = 143 bits (158), Expect = 3e-29
Identities = 147/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| | |||||||||||||||||||||||
Sbjct 28243 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCGTCGAGCTGCTTGCCGGCGAA 28184
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | ||| | || |||||||| ||||||| |||| | |
Sbjct 28183 GATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCGCTGATCTTGCTCTTCACAGC 28124
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||||||| || || || || | ||||| || || ||||| || || || |
Sbjct 28123 CTCGATCGTGTCGCTAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGAT 28064
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 28063 GAAGATCTGCAT 28052
>seq295
Length=432776
Score = 132 bits (146), Expect = 5e-26
Identities = 174/240 (73%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423
||||| || | | ||| | |||| ||||| || |||||||||||| |||||||||
Sbjct 305609 TTGCCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCG 305668
Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483
|| ||||| || | ||||| ||||||||||| || || || | ||||| ||||| |
Sbjct 305669 GAAAGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGG 305728
Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543
|| | | |||||||| |||||| |||||| | | | | |||||||| || ||
Sbjct 305729 GGAATTCCTTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGACTCT 305788
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCACAA 46602
|| || | ||| ||||| |||||||| | ||| || | || || ||||| ||||| |||
Sbjct 305789 ACTTCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCATCTTTGCTCAA 305848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565236315683400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |