Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq277 134 2e-26 >seq277 Length=119773 Score = 134 bits (148), Expect = 2e-26 Identities = 521/810 (64%), Gaps = 14/810 (2%) Strand=Plus/Minus Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || |||||||| ||||| || || | ||||| || |||||| |||| |||| | | Sbjct 80784 GCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTAC 80725 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA--GTAT 48117 |||| || ||||||||| | | | || | | | ||| || || ||| Sbjct 80724 CAAAGCTTCTGAGCCTTTATGGTACGACGGCCCTTTCCAGCCTTTTCATACTTCTCGTAA 80665 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 | | | |||||||||||| || || || | | | | ||||| ||||| || || |||| Sbjct 80664 AGAGC--CTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACA 80607 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | | || |||||| |||| ||| || | |||| || | ||| || |||||||| | Sbjct 80606 TAAGTGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGG 80547 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | || || | ||| | | | | ||||| ||||| ||| | || || | || Sbjct 80546 CCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAA 80487 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 |||| | | ||| ||||||| || || | || || || | |||| || || || | Sbjct 80486 AGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGT 80427 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | || ||||| || | || | ||||| ||||| || || | ||||| || | ||| | Sbjct 80426 TCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCC 80367 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA--CTAAT 48475 |||| || | || || || || | ||||| ||| |||| | || ||| | | Sbjct 80366 CATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACAC 80307 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 || | || || ||||| || || || || || || || | || || ||||| || Sbjct 80306 TG--AGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTA 80249 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAG-ACATTTGCGGAT 48594 ||| || || ||| ||| || |||| |||| || || | || || ||| || || | Sbjct 80248 AATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGC-ACGAGCTCATCTGAGGCT 80190 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 |||||||| ||| | || || || || || || | || |||| | || | | Sbjct 80189 TTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAA 80130 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTG--ATGTATACCTATAGATACACG 48712 || || || || || | | ||| ||| | ||| ||||| || || || || Sbjct 80129 GGTTGTAAGTCTC--TACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCG 80072 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||| | ||||| ||||| | || || ||| ||||| ||||| | || || Sbjct 80071 CATGATCATATGCTGAGGGCGCTCGTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCG 80012 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || | ||||| ||||||||||||||||| Sbjct 80011 CTCTAGCGTTTTGAAACCAAAATAGTTGTA 79982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106727223800