Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06]
295 sequences; 9,369,115 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq290 116 3e-20
seq260 98.7 8e-15
>seq290
Length=200701
Score = 116 bits (128), Expect = 3e-20
Identities = 319/485 (66%), Gaps = 8/485 (2%)
Strand=Plus/Minus
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||| || || |||||||| || |||||| | || || |||| ||| | |||||
Sbjct 5835 GTTGAGATCATCGCCAATGAGCAGGGTAACCGTGTCACCCCGTCTTTCGTTGCCTTCACT 5776
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| | || | | || | |||||||| || || | || || | || || | ||
Sbjct 5775 GATAAGGAGCGTCTAATCGGTGATGCTGCCAAGAACCAGGCTGCGCTCAACCCGAGAAAC 5716
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
||| |||| |||||||| ||| | ||||| | |||| |||| | ||||| |||
Sbjct 5715 ACTGTTTTCGATGCTAAGCGTCTTATTGGTCGTCGTTTCGATGAGACTACTGTCCAGAGC 5656
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||| ||| ||||| ||| | | || | || || || | ||||| | |
Sbjct 5655 GATATCAAGAGCTGGCCCTTCAAGGTCATTGACAGAAACGGCAACCCATTCATTGAGGTT 5596
Query 550292 -ACT--CATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTT 550347
| | | || || | || || | ||| || || | | ||||| | |||||| |
Sbjct 5595 GAGTACCTTGGAGAAACT----AAGACTTTCTCTCCTCAGGAGATTTCTGCCATGGTTCT 5540
Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407
| || ||||| | | ||| || ||| || | ||| | || || |
Sbjct 5539 TGTCAAGATGAAGGAGATCGCCGAGGCCAAGCTTGCCCAGAAGGTTGACAAGGCCGTCGT 5480
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||||| || || || || || ||||| |||||||| || || || |||||||| ||
Sbjct 5479 CACTGTTCCTGCCTACTTCAACGACTCTCAACGTCAGGCCACCAAGGATGCTGGCTCCAT 5420
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||||| || ||||| |||||||||||||| || ||||| |||||||| ||||||| ||
Sbjct 5419 TGCTGGCCTCAATGTCCTTCGTATTATCAACGAGCCTACCGCTGCTGCTATTGCATACGG 5360
Query 550528 ACTTG 550532
||||
Sbjct 5359 TCTTG 5355
>seq260
Length=85802
Score = 98.7 bits (108), Expect = 8e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| || || || || || ||||| || ||||| || || || || ||
Sbjct 77957 GCCGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCC 78016
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
||| |||||||| || || || |||||||||||||| || || ||||| ||||| ||
Sbjct 78017 GGAACCATTGCTGGTCTCAACGTCCTTCGTATTATCAACGAGCCCACTGCGGCTGCCATT 78076
Query 550520 GCATATGGACTTGATAA 550536
||||| || ||||| ||
Sbjct 78077 GCATACGGCCTTGACAA 78093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029280399069550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |