Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq277 181 2e-40 seq285 141 2e-28 >seq277 Length=119773 Score = 181 bits (200), Expect = 2e-40 Identities = 757/1177 (64%), Gaps = 31/1177 (3%) Strand=Plus/Minus Query 221360 GGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA--GACTGCG 221417 ||||| || ||||| ||||| || ||||||| | | ||| | ||| ||| | Sbjct 81243 GGACTGCCCTCGTAAGACTCATAAGGACCGTCGCGCTGAGCCAA--CTCAATCGACGCCT 81186 Query 221418 TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAG 221477 || || |||||||||| |||||||||||| |||||| ||| ||||| || Sbjct 81185 CCACAGCTCCGTGGTAGATAGTCTCAAAGATCTGGACGTTGAGCTCCTTCGCCTCTTCAG 81126 Query 221478 AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | ||| || | |||||||| ||| | || || || || || || || | | | Sbjct 81125 AGTCGAAAGGAAGGCGCAGCATGAAGAAGGCATCAGCAAGACCTTGGACACCCAGGGCAA 81066 Query 221538 TGGGCCTGTGTCTCCTGTTGGA-AGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 |||| | || | | |||| || || | || || || || || ||| |||| |||| Sbjct 81065 TGGGGCGATGACGCATGTTAGACAGACGA-GCCTCAGGAACTGGGTAATAGTTTTTGTCG 81007 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||| | |||| |||| || || || || || | || ||| || Sbjct 81006 ATGATGTTGTTCAAGTTCCGAGTAATCACCTTGACAACGCTGTGAAGACTCT------TG 80953 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 || | |||| | || || | | | || | |||||| ||||| || ||| Sbjct 80952 AAGTCAAACTGTACTCCATCTTCCTGCGTTTTAATAAAAGCAGGGAGGGCTACAGAGGCA 80893 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTG 221776 ||||| ||||| || ||| || | | ||||| | || || ||| | ||| Sbjct 80892 AGGTTGCACACAGCAGTCTCCTCAGGGGATGAATACTCAACAATTTCGCAACACAAATTG 80833 Query 221777 CTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAG 221836 || ||||||||| || || | || || || |||||| |||||||| ||||||||| Sbjct 80832 GAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAG 80773 Query 221837 AGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG 221896 ||||| ||||| |||||||| ||||||| | ||||| || ||| || | |||| Sbjct 80772 AGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGCT-TCTG 80714 Query 221897 -GCGCTCACCGTCCTCTTGACTGCACCCTCG-GTCTTTTCATAC--CCGGTATAGAGCAT 221952 || | | || | ||| || | || | |||||||||| | ||| ||||| | Sbjct 80713 AGCCTTTATGGTAC----GACGGCCCTTTCCAGCCTTTTCATACTTCTCGTAAAGAGCCT 80658 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 |||| | || ||||| | || | ||||| || || | ||| ||||| || | Sbjct 80657 --CAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGT 80600 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC-TGAA 222071 ||| | | ||||||| | || |||||| || || || ||||| || ||| |||| Sbjct 80599 CCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAA 80540 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | ||||| | | || ||| ||| ||||| ||||| | ||| || | ||| || | Sbjct 80539 A-AGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGA 80481 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || | ||||||||||| || |||| ||| | || || || |||||||| |||| Sbjct 80480 ACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCAC 80421 Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 | || || | | | ||| | |||| | | || | | || | | || || Sbjct 80420 CTTGGTCGA-CGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTC 80362 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC--A 222308 || ||||| || || || || | || || | | |||| ||| || | Sbjct 80361 GAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTA--TGCACACTGA 80304 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 || || |||||||| |||||||| | ||||||||||| ||||| || || | Sbjct 80303 GCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATAC 80244 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 |||| ||||| || ||||| | ||| | || || || || |||||||| || | | Sbjct 80243 CCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTGAGGCTTTGGAG 80184 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 | || || ||| ||||| |||||| || ||||| | ||||| || | || Sbjct 80183 TTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGT 80124 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 | |||||||||||| ||| |||| || || ||||| Sbjct 80123 AAGTCTCTACGACTTTGGGTATGTCATCGCCATGAAT 80087 >seq285 Length=150650 Score = 141 bits (156), Expect = 2e-28 Identities = 463/715 (65%), Gaps = 31/715 (4%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || |||||||| || |||||| || || || |||||||| ||| |||||| | Sbjct 139493 GCTTTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGT 139434 Query 25663 GAAGT--GCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 || || | | | | |||||||| ||||||||||| |||||||| || ||||| Sbjct 139433 GAGGTTGGTATTCCC--GAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACA 139376 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGAC-GTCGCCGAG 25776 | ||||||||| ||| | |||||||| || ||| | | |||| || | Sbjct 139375 TTCACTCTGAGACTTATTCT---CTTCTGATTGATACATACGTGAAAGACAGT-----AA 139324 Query 25777 AGAGATCGGCTGTTTGGT----GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| || || | || | |||||| ||| ||| ||| | |||||| Sbjct 139323 AGAGGCCGACTTTCTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAA 139264 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| | ||||||| | | | ||| |||| || | ||||| || | |||| Sbjct 139263 GTGGGCACTTCGTTGGATCAGCGACGCTGAGT-CTACCTTCGCAGAGCGCCTAATTGCCT 139205 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | |||||||| || || |||| ||||| || |||||||| | ||||||||||| || Sbjct 139204 TCGCTGCTGTTGAAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAA 139145 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| ||||| |||||| |||||||| || || | || |||||| Sbjct 139144 AGCGTGGGCTCATGCCTGGGCT-TACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGT 139086 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 | |||| ||||||||||| || || | || ||||||||| || ||| | Sbjct 139085 ATGCACACCGATTTTGCCTGTCTCCTATTCA---GCCACTTGCAGAACCGCCCTAGCCGT 139029 Query 26071 GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT--TTCNNNNNN 26128 | | ||| | || ||||||| || || || || || ||| | || | ||| Sbjct 139028 GCTATCGTTGAGAGAATCATCACTGAAGCCGTCGACATTGAGCAAGAATACTTC--CGCG 138971 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | ||||||| |||||| | |||| Sbjct 138970 ATGCTTTGCCTGTAAGTCTTCTCGGCATGAACGCCGACCTCATGAACCAATATGTCGAGT 138911 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 || ||||||| | |||||| |||| | | | |||||| | | | || | Sbjct 138910 TCGTCGCCGACCGTTTGCTGTTGGCTTTGGGCCACAAGCGCGTCTACAATGTGACCAATC 138851 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 |||| ||||||||||| ||||| || | | || |||||||| |||||||| || Sbjct 138850 CGTTTGACTTTATGGAGAACATCTCTCTTGCTGGAAAGACCAATTTCTTTGAGAA 138796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841374884800