Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq260 118 8e-21 seq290 98.7 7e-15 >seq260 Length=85802 Score = 118 bits (130), Expect = 8e-21 Identities = 463/721 (64%), Gaps = 8/721 (1%) Strand=Plus/Minus Query 281755 AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTC 281814 ||| || || || |||| ||||||||| || ||||| || |||||||| || | || Sbjct 78673 AAGGATGGCAGCCTGAACAGCAGCACCGTAGGCAACGGCCTCATCAGGGTTGATAGAGCG 78614 Query 281815 ATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAG 281873 || || | || ||| ||| |||| || || | ||| | ||| || ||||||| Sbjct 78613 GTTGAGCTCCTTGCCAGAGAAGAAATCACTAACGAGCT-TCTGAATCTTGGGGATACGAG 78555 Query 281874 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 281933 || || ||||| | ||||| || || || | || || | | || | |||| | Sbjct 78554 TGGAACCACCAACAAGCACAATCTCGTGAACGTCAGACTTGCCAACCTTGGCATCCTTGA 78495 Query 281934 AAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATT 281993 || || || || || | || | || | ||| || | || |||||| Sbjct 78494 GGACCTTCTCGACAGGAGAGATGGTAGAGCGGAAAAGATCTTGGCACATCTCCTCGAATC 78435 Query 281994 TAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATC 282052 ||| | ||| | || | || || ||||| || || ||||||| || | ||||| Sbjct 78434 GAGCACGAGTGATAGA-AGTGTAGAAGTCAATACCCTCATACAAAGAGTCGATCTCAATA 78376 Query 282053 GTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTT 282112 | ||| || || || || || || || || || ||||| || ||||| || || || | Sbjct 78375 GGAGTCTGGGTAGAGGAGGAGAGGGCGCGCTTGGCACGCTCGCATGCAGTTCTCAGACGG 78316 Query 282113 CGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA 282170 || | ||| |||| ||| | | | || | || || || | |||||| || | Sbjct 78315 CGGAGGGCAC--GCTGGTTGCCAGTAATGTCCTTCTTGTACTTGCGCTTGAACTCCTGGG 78258 Query 282171 CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 282230 | | | || ||||| || || ||||| ||||| ||||| | ||| | || | | Sbjct 78257 CGAAGTGGTTGACCAGACGGTTGTCGAAATCCTCACCACCCAAGTGAGTGTCACCAGCGG 78198 Query 282231 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCAC 282290 | | | || | ||| | ||||| |||| ||| | || ||||| ||| |||| Sbjct 78197 TGGACTTGACCTCGAAGATACCATCGTCAATGCTCAACAAAGAGACATCGAAGGTACCAC 78138 Query 282291 CACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 282350 |||||| || || || || ||||| || || || ||||| || || | Sbjct 78137 CACCCAAGTCGAAGATGAGGACATTATGCTCACCAGAGCCCTTCTTGTCAAGGCCGTATG 78078 Query 282351 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 282410 ||| ||||| ||||| || || || ||||| | | || || ||||||||||| ||| Sbjct 78077 CAATGGCAGCCGCAGTGGGCTCGTTGATAATACGAAGGACGTTGAGACCAGCAATGGTTC 78018 Query 282411 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 282470 | || || || ||||| || | || || ||||| || || ||||| ||||| || |||| Sbjct 78017 CGGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGACGG 77958 Query 282471 C 282471 | Sbjct 77957 C 77957 >seq290 Length=200701 Score = 98.7 bits (108), Expect = 7e-15 Identities = 138/193 (72%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTT-----AT 282338 || ||||| |||| ||| |||||||| || | | | || | || ||| || | Sbjct 5297 GTACCACCGCCCAAATCGAAAATAAGGACGTACTTCTCCTCCTC--GGTCTTACCAGCAC 5354 Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 ||||||| || |||| ||||||||| || || || || ||||| | | ||||| || | Sbjct 5355 CAAGACCGTATGCAATAGCAGCAGCGGTAGGCTCGTTGATAATACGAAGGACATTGAGGC 5414 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 ||||||| || ||||| || ||||| || | ||| || ||||| || || ||||||| Sbjct 5415 CAGCAATGGAGCCAGCATCCTTGGTGGCCTGACGTTGAGAGTCGTTGAAGTAGGCAGGAA 5474 Query 282459 CAGTAATAACGGC 282471 |||| | ||||| Sbjct 5475 CAGTGACGACGGC 5487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740615916746670