Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq274 122 9e-23 seq295 111 2e-19 seq212 100 3e-16 seq285 82.4 8e-11 >seq274 Length=107525 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || || || ||||| ||||||||||||||| | Sbjct 41913 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAA 41972 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| ||||||||| || ||||| Sbjct 41973 AGGGTGCGGCCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 42032 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | ||||| ||| ||||| Sbjct 42033 ATGCCCTCCTTATCGCTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACC 42092 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || ||||| || | ||||||| ||| || ||||| Sbjct 42093 TCGAGGGTAATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCAT 42139 >seq295 Length=432776 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| |||||||| |||||||||||| || || || ||||| ||||| Sbjct 305636 TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTCAAGCTGC 305695 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| ||||| || | |||||| || || || || || ||||| || || || || Sbjct 305696 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGAGATCTTA 305755 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || || | |||||| || || || || || |||||||| || || ||| Sbjct 305756 CTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTTGCCCGTT 305815 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 || || || | |||||| ||||| || Sbjct 305816 AACGTCTTGATGAAAATCTGCATCTT 305841 >seq212 Length=31356 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| |||||||| ||||| || ||||||||||| | |||| | Sbjct 28269 AGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 28210 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||||||||||| ||||| || || |||| ||||||||| || ||||| |||||||| Sbjct 28209 CCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 28150 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || || || || || || Sbjct 28149 TTGTCGCTGATCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAGGGTG 28090 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || | ||| || ||||| Sbjct 28089 ATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCAT 28052 >seq285 Length=150650 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 21717 GAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGT 21776 |||||| ||||||| |||||||| ||||| ||||||||||||| ||||||| ||| || Sbjct 139062 GAGACAGGCAAAATCGGTGTGCATACCCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGT 139121 Query 21777 GAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAA 21824 || || ||||| | || || ||||| | | || |||| ||||| Sbjct 139122 AAGCCCAGGCATGAGCCCACGCTTTTTCAGCCAGAAGATTGATGCAAA 139169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396536343400