Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq277 206 3e-48 seq212 134 2e-26 seq274 125 8e-24 >seq277 Length=119773 Score = 206 bits (228), Expect = 3e-48 Identities = 702/1086 (65%), Gaps = 31/1086 (3%) Strand=Plus/Minus Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753 |||||| | | || || ||| | ||| | ||||| || || || || || | ||| || Sbjct 81124 GTCGAAAGGAAGGCGCAGCATGAAGAAGGCATCAGCAAGACCTTGGACACCCAGGGCAAT 81065 Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813 ||||| || ||| |||| || | ||||| |||| ||||||| |||| || ||||| Sbjct 81064 GGGGCGATGACGCATGTTAGACAGACGAGCCTCAGGAACTGGGTAATAGTTTTTGTCGAT 81005 Query 80814 GACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA 80873 || | ||||| ||| || |||| ||| ||| ||||| ||| ||||| || Sbjct 81004 GATGTTGTTCAAGTTCCGAGTAATCACCTTGACAACGCTGTGAAGACTCTTGAAGTCAAA 80945 Query 80874 TTGGTTCCC--CTTC----------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921 || || |||| | ||| || || ||| | || || || ||||| Sbjct 80944 CTGTACTCCATCTTCCTGCGTTTTAATAAAAGCAGGGAGGGCTACAGAGGCAAGGTTGCA 80885 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 ||| || ||| |||| || | |||| || ||||| |||||||| || ||| Sbjct 80884 CACAGCAGTCTCCTCAGGGGATGAATACTCAACAATTTCGCAACACAAATTGGAGCTCTT 80825 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 || || || || || |||||||| |||| |||| ||| ||||||||| |||| | Sbjct 80824 GATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAA 80765 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 ||| |||| |||||| ||| | || || || |||| ||||| || | ||||| | Sbjct 80764 GGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGCTTCTGAGCCTTTAT 80705 Query 81102 CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACC 81161 ||| || || | ||||||| ||||| | || || | | || Sbjct 80704 GGTACGACGGCCCTTTCCAGCCTTTTCATACTTCTCGTAAAGAGCCTCAAATTCATCTCC 80645 Query 81162 GTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTT 81221 || || |||| ||| | ||||| ||||| |||||||| || ||| || | || Sbjct 80644 GTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGTCCAATCAGCATCCGC 80585 Query 81222 CTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCG 81281 | || ||||||||| || || ||||| ||||| |||| || ||||| ||| Sbjct 80584 TTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAAAAGATCGCGTGCGCG 80525 Query 81282 CGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCA 81341 ||| || | || || || ||||| |||| |||||| | | || ||||||| Sbjct 80524 AATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGAACACATCGTCATGCCA 80465 Query 81342 TGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACG 81398 ||||| || || | ||| | | || || | ||||| |||| ||||||||| Sbjct 80464 CGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCACCTTGGTCGACGTAACG 80405 Query 81399 GGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACC 81458 ||||| ||| | ||||||||||| || | || |||| || ||||||||||| Sbjct 80404 AGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTCGAGGTTCCGTTCGTACC 80345 Query 81459 CACGATACGCGACCCCTTGGCGCGCACCT--TGCTGATTGAAAGACCGATGCCACCTGAC 81516 | ||| || || | ||||| | | ||| | || || || || ||||| | Sbjct 80344 AGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTG--AGCCCAATCCCACCGGCA 80287 Query 81517 CACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTT 81576 |||| || || | || || | |||| || || ||||| ||||| || ||| | Sbjct 80286 GACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATACCCTCAATAGAATCGTCC 80227 Query 81577 TTCATGT---CAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGA 81631 ||||||| | || ||| | |||| ||||||||| ||| ||| || |||||| Sbjct 80226 TTCATGTTTACGAGGAAGCACGAGCT---CATCTGAGG--CTTTGGAGTTCCTGCATTGT 80172 Query 81632 ACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGA 81691 ||| || || | ||||| |||| || ||| ||||| |||| || || || || Sbjct 80171 ACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGTAAGTCTCTACGA 80112 Query 81692 CGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGC 81750 | || || || || || |||||||| || | || ||||| | ||| | ||| |||| Sbjct 80111 CTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATCATATGCTGAGGGC 80052 Query 81751 GTCTCG 81756 | |||| Sbjct 80051 G-CTCG 80047 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||||||||||||| || |||||||| || || ||||||||| | ||||||| Sbjct 81786 GTGCGCAGATAGTACATACCGGTCTTGAGCCCTTTAGACCAGCCGTAGAAGTGCATACTC 81727 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | ||||| | | ||||||| | ||| ||||||||||| |||| || |||| Sbjct 81726 GTAAGCTTGCCCATTGTGGGGGATTGCATATAGATGTTCAGACTCTGACTTTGGTCGATG 81667 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 |||| || | | || ||||| || ||||| |||||| || ||||| ||||| Sbjct 81666 AAAGGTCCTCTGCCAGCGGCCATATCGATAATCACCTTTTGACTGATCTCCCAAACTGT 81608 >seq212 Length=31356 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||| || || || |||||||| || |||||||| ||||| | Sbjct 28052 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 28111 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | | ||||| || || ||| |||||||| || ||||| || ||||| Sbjct 28112 GACACGATCGAGGCTGTGAAGAGCAAGAT-CAGCGACAAGGAAGGCATTCCGCCTGACCA 28170 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| ||||| |||| || ||||| | ||||| || Sbjct 28171 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAA 28230 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | || ||||| ||||| Sbjct 28231 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGCCTTCGTGGTGG 28278 >seq274 Length=107525 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| | || || || || || ||||||||||| || ||||| ||||| || Sbjct 42139 ATGCAGATCTTCATTAAAACCCTGACGGGTAAGACTATTACCCTCGAGGTGGAGTCGAGT 42080 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | | ||||| || || ||| || |||||||| || || || ||||| Sbjct 42079 GACACCATCGAGGCTGTGAAGAGCAAGAT-CAGCGATAAGGAGGGCATCCCGCCTGACCA 42021 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 42020 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGATGATGGCCGCACCCTTTCCGACTACAA 41961 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || |||||||| | || | ||||| || ||||| Sbjct 41960 CATTCAGAAGGAGTCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 41913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308296980400