Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq212 141 2e-28 seq295 129 1e-24 seq274 125 2e-23 >seq212 Length=31356 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || |||||||| || |||||||| || || | ||||| Sbjct 28273 ACGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 28214 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| || || || |||||||| |||| || Sbjct 28213 GCGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCC 28154 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTC 211069 ||||||||| |||||| ||||| ||||| ||||| ||| || ||||| Sbjct 28153 TTCCTTGTCGCTGATCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGA---CTCGACCTC 28097 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| | || | |||||| Sbjct 28096 AAGGGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCAT 28052 >seq295 Length=432776 Score = 129 bits (142), Expect = 1e-24 Identities = 166/228 (73%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || | || ||||||||||| ||||||||||| || || | ||| || Sbjct 305617 ACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 305676 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| || ||||| || || ||||||||||| |||| ||| Sbjct 305677 ACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCC 305736 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTC 211069 ||||||||| |||||| || || || |||||||| ||| || || || Sbjct 305737 TTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGA---CTCTACTTC 305793 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| ||||| | ||||| | || | |||||| || Sbjct 305794 TAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCATCTT 305841 >seq274 Length=107525 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| || || ||||| || || | |||||| | ||||| Sbjct 41928 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCA 41987 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || |||||||| || | || ||||| || Sbjct 41988 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCG 42047 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||| ||||| |||||||||||| || |||||||| || || ||| Sbjct 42048 CTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAATAGTC 42107 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || | || | |||||| Sbjct 42108 TTACCCGTCAGGGTTTTAATGAAGATCTGCAT 42139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147618767675