Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06]
295 sequences; 9,369,115 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq274 113 4e-20
seq212 96.9 3e-15
>seq274
Length=107525
Score = 113 bits (124), Expect = 4e-20
Identities = 155/213 (73%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || |||| ||| || || | |||||
Sbjct 41930 CACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCATC 41989
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||| ||||| || || || |||||||||||||| | || | || ||| || || |
Sbjct 41990 AAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCGCT 42049
Query 39195 GAT-TTTCTGTT-TGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
||| || || || ||| ||| | || || ||||||||||| || | || ||| |
Sbjct 42050 GATCTTGCTCTTCACAGCCTCG--ATGGTGTCACTCGACTCCACCTCGAGGGTAATAGTC 42107
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
|| |||||||| ||||||| ||||| ||||||
Sbjct 42108 TTACCCGTCAGGGTTTTAATGAAGATCTGCATC 42140
>seq212
Length=31356
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || |||||| ||| || || || || || || | || || || |
Sbjct 28267 GCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCC 28208
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| || || || |||||||||||||| | || | || || ||
Sbjct 28207 ATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 28148
Query 39189 GTCCATGAT-TTTCTGTT-TGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246
||| |||| || || || ||| ||| | ||| ||||| ||||| || || | |||
Sbjct 28147 GTCGCTGATCTTGCTCTTCACAGCCTCG--ATCGTGTCGCTAGACTCGACCTCAAGGGTG 28090
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
||| | || ||||| || || || | ||||| ||||||
Sbjct 28089 ATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCATC 28051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429544055649335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |