Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq274 113 4e-20 seq212 96.9 3e-15 >seq274 Length=107525 Score = 113 bits (124), Expect = 4e-20 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || || || || |||| ||| || || | ||||| Sbjct 41930 CACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCATC 41989 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || |||||||||||||| | || | || ||| || || | Sbjct 41990 AAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCGCT 42049 Query 39195 GAT-TTTCTGTT-TGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || || ||| ||| | || || ||||||||||| || | || ||| | Sbjct 42050 GATCTTGCTCTTCACAGCCTCG--ATGGTGTCACTCGACTCCACCTCGAGGGTAATAGTC 42107 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || |||||||| ||||||| ||||| |||||| Sbjct 42108 TTACCCGTCAGGGTTTTAATGAAGATCTGCATC 42140 >seq212 Length=31356 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || |||||| ||| || || || || || || | || || || | Sbjct 28267 GCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCC 28208 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || |||||||||||||| | || | || || || Sbjct 28207 ATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 28148 Query 39189 GTCCATGAT-TTTCTGTT-TGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||| |||| || || || ||| ||| | ||| ||||| ||||| || || | ||| Sbjct 28147 GTCGCTGATCTTGCTCTTCACAGCCTCG--ATCGTGTCGCTAGACTCGACCTCAAGGGTG 28090 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||| | || ||||| || || || | ||||| |||||| Sbjct 28089 ATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCATC 28051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544055649335