Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F000950655.1_202015-02-06] 295 sequences; 9,369,115 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq274 104 6e-17 seq212 102 2e-16 >seq274 Length=107525 Score = 104 bits (114), Expect = 6e-17 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||| | ||||| || || || || || || |||||||||||||| ||| Sbjct 42136 CAGATCTTCATTAAAACCCTGACGGGTAAGACTATTACCCTCGAGGTGGAGTCGAGTGAC 42077 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAG-GACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||||| || || ||||| ||| || || || || ||||| || |||||||| Sbjct 42076 ACCATCGAGGCTGTGAAGAGCAAGAT-CAGCGATAAGGAGGGCATCCCGCCTGACCAGCA 42018 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || ||||||||||| || ||||| || ||||| | || ||| |||| || ||| | Sbjct 42017 GCGTCTGATCTTCGCCGGCAAGCAGCTTGATGATGGCCGCACCCTTTCCGACTACAACAT 41958 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 41957 TCAGAAGGAGTCTACTCTTCA-CTTG 41933 >seq212 Length=31356 Score = 102 bits (112), Expect = 2e-16 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||| | || || ||||| || || || |||||||| ||||| || ||| Sbjct 28055 CAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC--- 28111 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAG-GACAAAGAAGGAATCCCTCCGGACCA 178039 ||||| |||||| || || ||||| ||| ||||| ||||| || || || ||||| Sbjct 28112 GACACGATCGAGGCTGTGAAGAGCAAGAT-CAGCGACAAGGAAGGCATTCCGCCTGACCA 28170 Query 178040 GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 ||| || || ||||||||||| || |||||||| ||||| | || || | || || || Sbjct 28171 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAA 28230 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||| || || || || || || |||| Sbjct 28231 CATCCAGAAGGAGTCCACGCTCCA-CTTG 28258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726650272230