Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 228 1e-54 >seq1 Length=2987201 Score = 228 bits (252), Expect = 1e-54 Identities = 709/1083 (65%), Gaps = 42/1083 (4%) Strand=Plus/Minus Query 53782 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 53841 |||||||||||| | ||| | || || ||||| ||| |||||||| || || || Sbjct 1206937 CTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCAT 1206878 Query 53842 GAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTT 53901 ||| || ||||||| || |||| | || | ||| || | ||| | ||||||| Sbjct 1206877 GAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGCTTCTGAGCCTT 1206818 Query 53902 TATTATA-GA------TTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTT 53951 ||| || || ||| | | |||||| ||| ||||| || | | Sbjct 1206817 TATGGTACGACGGCCCTTTCCAGC-CTTTTCATACTTCTCGTAAAGAGCCT--------- 1206768 Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 54011 |||| || ||||| |||| | | | ||||| ||||| | || ||||| | | || Sbjct 1206767 CAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGTCC 1206708 Query 54012 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 54071 | || | || | || || || ||||| || ||||| ||||||||||| || || || | Sbjct 1206707 AATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAAAA 1206648 Query 54072 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 54131 |||| | | | | || || || || ||| || || |||| || | | | Sbjct 1206647 GATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGAACA 1206588 Query 54132 TATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCT 54191 ||| ||||||||| || | ||| |||| | | ||||| || ||||| || || | Sbjct 1206587 CATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCACCTT 1206528 Query 54192 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 54251 | || | ||| | ||| ||||| || || || | |||||| |||| ||| ||||| || | Sbjct 1206527 GGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTCGAGG 1206468 Query 54252 CACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATAGACC 54309 || || || || | ||||| ||| | || || || ||| | | ||| | || Sbjct 1206467 TTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTGA--GCCC 1206410 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 ||||| || || || ||||| | ||||| | || | ||||| || || ||||| Sbjct 1206409 AATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATACCCTC 1206350 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGACTAGTTC 54428 ||| ||| ||| ||||||| | || || || | || ||| || | ||||| Sbjct 1206349 AATAGAATCGTCCTTCATGTTTACGAGGAAGCA-CGAGCTCATCTGAGGCTTTGGAGTTC 1206291 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | ||||| | ||||| || || ||||| || || |||| | || | || ||||| | Sbjct 1206290 CTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGTAAG 1206231 Query 54489 TCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACAT 54546 |||| | || | ||| || || | |||||| || | | ||| ||||| | ||| Sbjct 1206230 TCTCTACGACTTTGGGTATGTC--ATCGCCATGAATACCAATGGAGACGCGCATGATCAT 1206173 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTG-TTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 |||||||| | || || ||| | |||| ||||||||||||||| || | | Sbjct 1206172 ATGCTGAGGGCGCTCGT-GAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTAGCG 1206114 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 |||| ||||||||||||||||| ||||| || || |||| || | |||||||| | Sbjct 1206113 TTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTTGAGCT 1206054 Query 54666 TATCCTTATATTTGTTAACTACATCCATGGTAATACTT-----GAAATAATCGGAGAATG 54720 || || || | || || || || |||| | ||||| || |||||||| Sbjct 1206053 CTTCAGCATGCTTCTGGACAACGTC----GT-ATACCTCTTGGGAAATCATTGGAGAATG 1205999 Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttt 54780 || |||| |||||| |||||| || | ||||| || || | || || | ||| Sbjct 1205998 CTTGTCATTGCGAGGATTCACATAGCGGAAAAGATCCTCAATGACCTGGCTGAACACTTT 1205939 Query 54781 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 54840 |||||| | |||||| ||||| || || || |||| || || || |||||| || || Sbjct 1205938 TTTTGTCTGTTTGTGGAGATTAGACACTGCAATTCGTGCAGCAAGCTGGGCATAGTCAGG 1205879 Query 54841 ATG 54843 || Sbjct 1205878 GTG 1205876 Score = 165 bits (182), Expect = 1e-35 Identities = 582/902 (65%), Gaps = 24/902 (3%) Strand=Plus/Minus Query 23859 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGAT 23918 |||||||| || || ||||| || || || | | || || || ||||| || || | Sbjct 897295 ACACGTTTCTCAAAGAAATTGGTCTTTCCAGCAAGAGAGATGTTCTCCATAAAGTCAAAC 897236 Query 23919 GGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACA 23978 |||||||| ||||| |||| | || ||||| | | | ||| | || ||||| Sbjct 897235 GGATTGGTCACATTGTAGACGCGCTTGTGGCCCAAAGCCAACAGCAAACGGTCGGCGACG 897176 Query 23979 AACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 24038 ||||| | |||| ||||| | || ||||| || | ||| | || || | ||| Sbjct 897175 AACTCGACATATTGGTTCATGAGGTCGGCGTTCATGCCGAGAAGACTTACAGGCAAAGCA 897116 Query 24039 ACA-GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTC 24097 | | ||| | |||||| ||||| ||| || || || || || ||| | | | Sbjct 897115 TCGCGGAAGTA-TTCTTGCTCAATGTCGACGGCTTCAGTGATGATTC-TCTCAACGATAG 897058 Query 24098 TTCA-CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGAC 24156 | || || | | | || || | || | | ||| || |||||| ||| | || Sbjct 897057 CACGGCTAGGGCGGTTCTGCAAGTGGCTGAATAGGAGACAGGCAAAATCGGTGTGCATAC 896998 Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || | ||| | ||||||||| || || || || ||||| || |||||||||| Sbjct 896997 CCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAGCCCAGGCATGAGCCCACGCTTTT 896938 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||| ||||| | ||||| || || || |||| Sbjct 896937 TCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAAGACACCTTCAACAGCAGCGAAGG 896878 Query 24277 CAATAAGTCTTTCTCCATA---------ACCGGCGCTGTCATGTATCCACTTTTGAGCCC 24327 |||| || | ||| | | | || ||||| ||||| | |||| Sbjct 896877 CAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCTG------ATCCAACGAAGTGCCC 896824 Query 24328 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 24387 | | |||||||| | | || || || || || || || ||| ||| | Sbjct 896823 ACTTAGCCTTCTTGCGAATGGAGGGAATGGTGAAGATGGCGTTGAACAGAAAGTCGGCCT 896764 Query 24388 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 24447 | ||||| ||||| || ||||||||||||| |||| ||| | || || |||||||||| Sbjct 896763 CTTTACTGTCTTTCACGTATGTATCAATCAGAAGAGAATAAGTCTCAGAGTGAATGTTTT 896704 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAA 24507 | || || || || |||||||||||| | ||||||| ||| || || || | Sbjct 896703 CCATCATAATCTGGAAGCCGTAGAAACATTTGGCCTCGGGAATACCAACCTCACCACTGA 896644 Query 24508 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 |||| || | | ||| ||||| || || || ||||| || ||||| || || | ||| Sbjct 896643 ATCGCTCAACGAGATTCTCATTGACAATGCCATCACTAGCAGCAAAGAAAGCAAGAACAC 896584 Query 24568 GTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTT---ATTCCAATCATTGATATCTTTA 24623 | | ||| ||| | ||||| | || | || || | ||| || | | || ||| Sbjct 896583 GGGACACAAAGTATCTCTCGTCATCGT-TCAGCTTGTGCTCCCAGTCGTGAGTGTCCTTA 896525 Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683 || || | ||| || | ||||||||||| ||||| || || || || | ||| Sbjct 896524 CCTAGGTCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGCTTTCTTGTAAGCCTGCCAA 896465 Query 24684 ATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGT 24743 || | || | || || || | |||||| | |||||||||| |||||| || Sbjct 896464 ATCGAGTTGTACTTGATCGGGAACAAAACAAACCGGTTTGGATTTTCCTGAAGGATGGGC 896405 Query 24744 TC 24745 || Sbjct 896404 TC 896403 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || || || |||| || || || ||||||||||| || || || || Sbjct 1207926 GTGAATTGAATCGGTGCCGAAGCGGCTTGAGTGCGCAGATAGTACATACCGGTCTTGAGC 1207867 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG--GAATAACTCGGATCTGCTA 52925 || | ||| ||||| || |||||||| || || ||| | | |||| ||| | Sbjct 1207866 CCTTTAGACCAGCCGTAGAAGTGCATACTCGTAAGCTTGCCCATTGTGGGGGAT-TGC-A 1207809 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 ||| ||| |||| | |||||||| |||||||| | ||| ||| | || ||||| | | Sbjct 1207808 TATAGATGTTCAGACTCTGACTTTGGTCGATGAAAGGTCCTCTGCCAGCGGCCATATCGA 1207749 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAA 53012 | ||| |||||| || ||||||| Sbjct 1207748 TAATCACCTTTTGACTGATCTCCCAAA 1207722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721481255680