Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 219 4e-52 seq3 109 6e-19 seq2 105 7e-18 >seq1 Length=2987201 Score = 219 bits (242), Expect = 4e-52 Identities = 532/796 (67%), Gaps = 16/796 (2%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| || ||||||||||| || ||||| | |||||| | ||||| |||||||| Sbjct 896475 TACAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAAATTGACCTAGGTAAGGACACT 896534 Query 116708 AGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 ||||||||||| | ||||||| ||||| | | || | | || || || Sbjct 896535 CACGACTGGGAGCACAAGCTGAACGATGACGAGAGATACTTTGTGTCCCGTGTTCTTGCT 896594 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 || || || || || || ||||| ||||| |||||||| || ||||| ||| | ||| Sbjct 896595 TTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGTGAG 896654 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884 || | ||||||| || ||||||||||| ||||| ||||| ||| | ||| Sbjct 896655 GTTGGTATTCCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATTCAC 896714 Query 116885 TCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT 116944 || || | ||||| || || || || |||||| | | ||| || | Sbjct 896715 TCTGAGACTTATTCTCTTCTGATTGATACATACGTGAAAGA--CAGTAAAGAGGCCGACT 896772 Query 116945 TT--GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGC 117002 || ||| ||||||||| || || || | | | ||||||| ||||||| || | Sbjct 896773 TTCTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCACTTC 896832 Query 117003 GCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 | |||||| || | ||| | |||||| |||||||| | |||||||| || || | Sbjct 896833 GTTGGATCAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTGTTG 896892 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 | || |||||||| ||| || || | || || ||||| || || || || |||| Sbjct 896893 AAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGCTCA 896952 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACT 117182 |||| || || |||||| |||||| || || || | || |||||| |||| ||| | Sbjct 896953 TGCCTGGGCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCGATT 897012 Query 117183 TTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGA 117242 |||||||| | || |||| || ||| | | || || ||| || ||| | |||| Sbjct 897013 TTGCCTGTCTCCTATTCAGCCACTTGCAGAACCGCCCTAGCCGTGCTATCGTT-GAGAGA 897071 Query 117243 -TCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 || |||| || || |||| ||| ||||| | | || ||| || |||| || || Sbjct 897072 ATCATCACTGAAGCCGTCGACATTGAGCAAGAATACTTCCGCGATGCTTTGCCTGTAAGT 897131 Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTG 117361 || || || | || ||| ||| ||||| ||||||||||||||||| | || Sbjct 897132 CTTCTCGGCATGAACGCCGACCTCATGAACCAATATGTCGAGTTCGTCGCCGACCGTTTG 897191 Query 117362 CTGCTCGAGCTGGTCGGCGCCAAGC---ACTACAACACGCCCAACCCGCTGGACTTTATG 117418 ||| | ||| | ||| ||||| |||||| | |||| ||| | ||||||||| Sbjct 897192 CTGTT--GGCT-TTGGGCCACAAGCGCGTCTACAATGTGACCAATCCGTTTGACTTTATG 897248 Query 117419 AACCTCATCTC-CTTG 117433 | |||||| |||| Sbjct 897249 GAGAACATCTCTCTTG 897264 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || |||||||| || || |||||| | || ||||| | | | Sbjct 2570176 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 2570235 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || |||||| || ||||| || | |||||| Sbjct 2570236 GACACGATCGAGGCTGTGAAGAGCAAGATCAGCGACAAGGAAGGCATTCCGCCTGACCAG 2570295 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| ||||| | ||||||||| ||||||||| Sbjct 2570296 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAAC 2570355 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| ||||||| || | ||| | ||| Sbjct 2570356 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGC 2570391 >seq3 Length=2072284 Score = 109 bits (120), Expect = 6e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||| | || ||| | |||||||| ||||| || | || || || | Sbjct 540644 AAAGATGCAGATTTTCATCAAGACGTTAACGGGCAAGACCATTACGCTAGAAGTAGAGTC 540703 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC-GACAAAGAGGGCATCCCCGCGG 40804 | ||||| | | | | ||||| || || ||| ||||| || || || ||| | | Sbjct 540704 TAGCGACACCATTGAGGCTGTCAAGAGTAAGAT-CTCTGACAAGGAAGGAATTCCCCCTG 540762 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| || || ||||||| || ||||| ||||| ||||| | || || || ||||| Sbjct 540763 ACCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGACGATGGTCGTACTCTTTCCGACT 540822 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||| |||||| |||| |||||| Sbjct 540823 ACAACATCCAAAAGGAGTCCACTCTGCAT 540851 >seq2 Length=2890200 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | ||||| || ||||| || || || ||| |||| || || | | Sbjct 724549 ATGCAGATCTTCATTAAAACCCTGACGGGTAAGACTATTACCCTCGAGGTGGAGTCGAGT 724490 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || ||| || ||||||||||| | |||||| Sbjct 724489 GACACCATCGAGGCTGTGAAGAGCAAGATCAGCGATAAGGAGGGCATCCCGCCTGACCAG 724430 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | |||||||| |||||||||| Sbjct 724429 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGATGATGGCCGCACCCTTTCCGACTACAAC 724370 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || || || Sbjct 724369 ATTCAGAAGGAGTCTACTCTTCA 724347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219096956160