Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 4e-18
seq1 105 4e-18
seq3 87.8 1e-12
>seq2
Length=2890200
Score = 105 bits (116), Expect = 4e-18
Identities = 154/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | |||| || ||||| |||||||||||||| || ||| | ||
Sbjct 724338 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCA 724397
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296
|| | ||||||||| ||||| || || ||||||||||| | |||| | || |||||| ||
Sbjct 724398 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG-ATGCCCTCCTTATC 724456
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
| ||||| ||| | | | | || | || |||| || || || | || || ||
Sbjct 724457 GCTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAATAGT 724516
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391
|| || || || ||||| | |||||||||||||
Sbjct 724517 CTTACCCGTCAGGGTTTTAATGAAGATCTGCATCG 724551
>seq1
Length=2987201
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | || || ||||| ||||||||||| || || ||| | |||
Sbjct 2570387 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCG 2570328
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||| || || ||||||||||| || | || |||||||||
Sbjct 2570327 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCG 2570268
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | |||| ||| | || ||||| || | ||||| ||
Sbjct 2570267 CTGATCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAGGGTGATAGTC 2570208
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || ||||| || || | ||||||||||||
Sbjct 2570207 TTCCCCGTGAGGGTCTTGATGAAGATCTGCATC 2570175
>seq3
Length=2072284
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || |||| || | ||| || || || ||||||||||||||
Sbjct 540874 CCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 540815
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | ||||| | ||||||||| || || ||||| ||||| ||||| |||
Sbjct 540814 AGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGA 540755
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| | ||||| ||| | | | | || | ||| | || || ||
Sbjct 540754 ATTCCTTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACT 540695
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||| ||||| ||||| || | || || | || |||||||||
Sbjct 540694 TCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCATC 540647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071937000960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |