Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 282 4e-71
>seq1
Length=2987201
Score = 282 bits (312), Expect = 4e-71
Identities = 641/958 (67%), Gaps = 16/958 (2%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| ||||| || || ||| || ||| | ||||| ||||||||| |||
Sbjct 1207008 GAGGCAAGGTTGCACACAGCAGTCTCCTCAGGGGATGAATACTCAACAATTTCGCAACAC 1206949
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
| |||| | ||| || || || | ||| |||||||||| || || ||| | ||||
Sbjct 1206948 AAATTGGAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 1206889
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | || |||||| ||| | ||| | || || ||| |
Sbjct 1206888 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGC 1206829
Query 23207 GTCTGAGCGTGAAC---ACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262
||||||| | | ||| || | | | || ||||| | | ||||| | ||| |
Sbjct 1206828 TTCTGAGCCTTTATGGTACGACGGCCCTTTCCAGCCTTTT----CATACTTCTCGTAAAG 1206773
Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
|| |||||||| | |||||| ||| || ||||| || ||| | || ||||| ||
Sbjct 1206772 AGCCTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAG 1206713
Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382
|||| | || || ||||| |||| || ||||| || ||||| || ||
Sbjct 1206712 TGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCAT 1206653
Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442
||| || ||||| ||||| | ||| || |||||| || || || || | ||||||
Sbjct 1206652 GAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTC 1206593
Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502
||||| || ||||||||||||||||||| | |||||| || || || | ||| || ||
Sbjct 1206592 GAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCC 1206533
Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562
|| || ||||||||||| || |||||||||||||| | | ||| || | | || ||
Sbjct 1206532 ACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATT 1206473
Query 23563 GGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620
|| | ||| | || || || | | || || | || || | ||| || || |
Sbjct 1206472 CGAGGTTCCGTTCGTA--CCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTG 1206415
Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680
| || || || ||| | || ||||| || | |||||| |||||||| ||||| ||
Sbjct 1206414 AGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATA 1206355
Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740
||||| || || || || | || | ||| ||||| ||| || | || ||
Sbjct 1206354 CCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTGAGGCTTTGGA 1206295
Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800
|| | || | ||| || || |||||| || |||||| || ||||| || |||
Sbjct 1206294 GTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTG 1206235
Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860
|| || || | | | ||||| || || || ||||| |||| ||||||||| |||
Sbjct 1206234 TAAGTCTCTACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATC 1206175
Query 23861 ATGTATTGAGGTCTCTC--GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918
|| | ||||| | ||| || | | || || | ||| | || || || || | |
Sbjct 1206174 ATATGCTGAGGGCGCTCGTGAACTT--TTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTA 1206117
Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|||||| || |||||||||| || || ||||||||||| | || ||||| || ||
Sbjct 1206116 GCGTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTT 1206059
Score = 140 bits (154), Expect = 3e-28
Identities = 367/553 (66%), Gaps = 13/553 (2%)
Strand=Plus/Plus
Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT-CT 57640
||||| || || || || || |||||||| | ||| ||| | ||||| |||||| ||
Sbjct 896475 TACAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAAATTGACCTAGGTAAGGACACT 896534
Query 57641 GAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTG-- 57695
| ||| ||||| | || || || |||||| | ||| | | ||||||
Sbjct 896535 CA-CGACTGGGAGCACAAGCTGAACGATGACGAGAGATACTTTGTGT--CCCGTGTTCTT 896591
Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755
|| || || || || ||||| ||||| || |||||| | || || ||||
Sbjct 896592 GCTTTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGT 896651
Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815
|| || | | ||||| | ||| || ||||| || || | || |||||| |
Sbjct 896652 GAGGTTGGTATTCCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATT 896711
Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA--AC 57873
|| || || | ||||| || || || ||||| |||||||| |||| | ||| ||
Sbjct 896712 CACTCTGAGACTTATTCTCTTCTGATTGATACATACGTGAAAGACAGTAAAGAGGCCGAC 896771
Query 57874 GTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAA 57933
| ||||||||||| ||| || || ||| | || ||||||||| ||||| ||
Sbjct 896772 TTT--CTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCAC 896829
Query 57934 TCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCG 57993
| ||||| | ||| | | || ||||| ||| | ||||| || ||||| || |
Sbjct 896830 TTCGTTGGATCAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTG 896889
Query 57994 TCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053
| |||||| | ||||| ||| ||||| |||| || ||| |||| || || || |
Sbjct 896890 TTGAAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGC 896949
Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113
| ||||| || || || || |||||| |||| |||||||| |||||| | || || |
Sbjct 896950 TCATGCCTGGGCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCG 897009
Query 58114 ATTTTGCGTGCCT 58126
||||||| || ||
Sbjct 897010 ATTTTGCCTGTCT 897022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766310846720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |