Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 282 4e-71 >seq1 Length=2987201 Score = 282 bits (312), Expect = 4e-71 Identities = 641/958 (67%), Gaps = 16/958 (2%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||| || ||| | ||||| ||||||||| ||| Sbjct 1207008 GAGGCAAGGTTGCACACAGCAGTCTCCTCAGGGGATGAATACTCAACAATTTCGCAACAC 1206949 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 | |||| | ||| || || || | ||| |||||||||| || || ||| | |||| Sbjct 1206948 AAATTGGAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 1206889 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || |||||| ||| | ||| | || || ||| | Sbjct 1206888 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGC 1206829 Query 23207 GTCTGAGCGTGAAC---ACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAA 23262 ||||||| | | ||| || | | | || ||||| | | ||||| | ||| | Sbjct 1206828 TTCTGAGCCTTTATGGTACGACGGCCCTTTCCAGCCTTTT----CATACTTCTCGTAAAG 1206773 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || |||||||| | |||||| ||| || ||||| || ||| | || ||||| || Sbjct 1206772 AGCCTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAG 1206713 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| | || || ||||| |||| || ||||| || ||||| || || Sbjct 1206712 TGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCAT 1206653 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || ||||| ||||| | ||| || |||||| || || || || | |||||| Sbjct 1206652 GAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTC 1206593 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 ||||| || ||||||||||||||||||| | |||||| || || || | ||| || || Sbjct 1206592 GAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCC 1206533 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 || || ||||||||||| || |||||||||||||| | | ||| || | | || || Sbjct 1206532 ACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATT 1206473 Query 23563 GGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 || | ||| | || || || | | || || | || || | ||| || || | Sbjct 1206472 CGAGGTTCCGTTCGTA--CCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTG 1206415 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | || || || ||| | || ||||| || | |||||| |||||||| ||||| || Sbjct 1206414 AGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATA 1206355 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 ||||| || || || || | || | ||| ||||| ||| || | || || Sbjct 1206354 CCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTGAGGCTTTGGA 1206295 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 || | || | ||| || || |||||| || |||||| || ||||| || ||| Sbjct 1206294 GTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTG 1206235 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || || | | | ||||| || || || ||||| |||| ||||||||| ||| Sbjct 1206234 TAAGTCTCTACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATC 1206175 Query 23861 ATGTATTGAGGTCTCTC--GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 || | ||||| | ||| || | | || || | ||| | || || || || | | Sbjct 1206174 ATATGCTGAGGGCGCTCGTGAACTT--TTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTA 1206117 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 |||||| || |||||||||| || || ||||||||||| | || ||||| || || Sbjct 1206116 GCGTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTT 1206059 Score = 140 bits (154), Expect = 3e-28 Identities = 367/553 (66%), Gaps = 13/553 (2%) Strand=Plus/Plus Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT-CT 57640 ||||| || || || || || |||||||| | ||| ||| | ||||| |||||| || Sbjct 896475 TACAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAAATTGACCTAGGTAAGGACACT 896534 Query 57641 GAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTG-- 57695 | ||| ||||| | || || || |||||| | ||| | | |||||| Sbjct 896535 CA-CGACTGGGAGCACAAGCTGAACGATGACGAGAGATACTTTGTGT--CCCGTGTTCTT 896591 Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 || || || || || ||||| ||||| || |||||| | || || |||| Sbjct 896592 GCTTTCTTTGCTGCTAGTGATGGCATTGTCAATGAGAATCTCGTTGAGCGATTCAGTGGT 896651 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || || | | ||||| | ||| || ||||| || || | || |||||| | Sbjct 896652 GAGGTTGGTATTCCCGAGGCCAAATGTTTCTACGGCTTCCAGATTATGATGGAAAACATT 896711 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA--AC 57873 || || || | ||||| || || || ||||| |||||||| |||| | ||| || Sbjct 896712 CACTCTGAGACTTATTCTCTTCTGATTGATACATACGTGAAAGACAGTAAAGAGGCCGAC 896771 Query 57874 GTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAA 57933 | ||||||||||| ||| || || ||| | || ||||||||| ||||| || Sbjct 896772 TTT--CTGTTCAACGCCATCTTCACCATTCCCTCCATTCGCAAGAAGGCTAAGTGGGCAC 896829 Query 57934 TCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCG 57993 | ||||| | ||| | | || ||||| ||| | ||||| || ||||| || | Sbjct 896830 TTCGTTGGATCAGCGACGCTGAGTCTACCTTCGCAGAGCGCCTAATTGCCTTCGCTGCTG 896889 Query 57994 TCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053 | |||||| | ||||| ||| ||||| |||| || ||| |||| || || || | Sbjct 896890 TTGAAGGTGTCTTCTTCAGTGGCTCGTTTGCATCAATCTTCTGGCTGAAAAAGCGTGGGC 896949 Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113 | ||||| || || || || |||||| |||| |||||||| |||||| | || || | Sbjct 896950 TCATGCCTGGGCTTACTTTCTCCAACGAACTGATTTCGCGCGATGAGGGTATGCACACCG 897009 Query 58114 ATTTTGCGTGCCT 58126 ||||||| || || Sbjct 897010 ATTTTGCCTGTCT 897022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766310846720