Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 214 2e-50 >seq1 Length=2987201 Score = 214 bits (236), Expect = 2e-50 Identities = 724/1112 (65%), Gaps = 28/1112 (3%) Strand=Plus/Minus Query 63020 CTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 63079 |||||| ||||| | ||| | || || ||||| ||| |||||||| || || || Sbjct 1206937 CTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCAT 1206878 Query 63080 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCT 63138 ||| || ||||||| || |||||| || | ||| || | ||| | | || |||||| Sbjct 1206877 GAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAA-GCTTCTGAGCCT 1206819 Query 63139 TTATTATA-GATTTGTATCTCCTTTCTCTTTCGTA--TAGAGTATACAATCGTTCGAACT 63195 |||| || || | ||| || |||| || | ||| | | | || || | Sbjct 1206818 TTATGGTACGACGGCCCTTTCCAGCCT-TTTCATACTTCTCGTAAAGAGCC--TCAAATT 1206762 Query 63196 CGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTC 63255 | ||||| |||| | | | | ||| ||||| | || ||||| | | ||| || Sbjct 1206761 CATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGTCCAATCAG 1206702 Query 63256 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63315 | || | || || || ||||| || ||||| ||||||||||| || || || ||||| | Sbjct 1206701 CATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAAAAGATCGC 1206642 Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375 || | | || || || || ||| || || |||| || | | | ||| Sbjct 1206641 GTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGAACACATCGT 1206582 Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435 ||||||||| || | ||| ||||| | | ||||| || ||||| || || || || | Sbjct 1206581 CATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCACCTTGGTCGA 1206522 Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495 ||| | ||| ||||| || || || | |||||| |||| ||| || || || | || | Sbjct 1206521 CGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTCGAGGTTCCGT 1206462 Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA--CTAATTGATAGACCTATTCC 63553 | ||||| | ||||| ||| | || || || ||| | | ||| | || || || Sbjct 1206461 TCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTGA--GCCCAATCCC 1206404 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613 || || || ||||| | ||||| | || | || || || || || || || Sbjct 1206403 ACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATACCCTCAATAGA 1206344 Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGAGTAGTTCCCGCAT 63672 ||| || ||||||| | || || || | || ||| || | | |||||| |||| Sbjct 1206343 ATCGTCCTTCATGTTTACGAGGAAGCA-CGAGCTCATCTGAGGCTTTGGAGTTCCTGCAT 1206285 Query 63673 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63732 | | ||||| || || ||||| || || |||| | || | || ||||| ||||| | Sbjct 1206284 TGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGTAAGTCTCTA 1206225 Query 63733 TAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63790 || | ||| || || | |||||| || | | ||| ||||| | ||| ||||| Sbjct 1206224 CGACTTTGGGTATGTC--ATCGCCATGAATACCAATGGAGACGCGCATGATCATATGCTG 1206167 Query 63791 AGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63850 ||| | || || ||| |||| ||||| ||||||||| || | ||||| || Sbjct 1206166 AGGGCGCTCGTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTAGCGTTTTGAA 1206107 Query 63851 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 ||||||||||||||| ||||| || || |||| || | || ||||||| || Sbjct 1206106 ACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTTGAGCTCTTCAGC 1206047 Query 63911 ATATTTGTTAACTATATCCATGGTAATACTT-----GAAATAATCGGAGAATGTTTCCCA 63965 || || | || | | | || |||| | ||||| || |||||||| || || Sbjct 1206046 ATGCTTCTGGACAA----CGTCGT-ATACCTCTTGGGAAATCATTGGAGAATGCTTGTCA 1205992 Query 63966 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 64025 || |||||| |||||| ||| | |||||| || || | || || | ||||||||| Sbjct 1205991 TTGCGAGGATTCACATAGCGGAAAAGATCCTCAATGACCTGGCTGAACACTTTTTTTGTC 1205932 Query 64026 TCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGT 64085 | ||||| ||||| || | || |||| || || || |||||| || || || Sbjct 1205931 TGTTTGTGGAGATTAGACACTGCAATTCGTGCAGCAAGCTGGGCATAGTCAGGGTGGACC 1205872 Query 64086 GTAGTACAAGTGGCTGCTATTTCGGCTGCCAG 64117 ||||| | || ||| | ||||| ||||| Sbjct 1205871 GTAGTCATTGACGCAGCTGTCTCGGCAGCCAG 1205840 Score = 188 bits (208), Expect = 9e-43 Identities = 577/885 (65%), Gaps = 24/885 (3%) Strand=Plus/Minus Query 33306 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 33365 |||||||| || || ||||| || ||||| | | || || || ||||| || |||||| Sbjct 897295 ACACGTTTCTCAAAGAAATTGGTCTTTCCAGCAAGAGAGATGTTCTCCATAAAGTCAAAC 897236 Query 33366 GGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACG 33425 |||||||| |||||||| | || ||||| | | | ||| | || |||||| Sbjct 897235 GGATTGGTCACATTGTAGACGCGCTTGTGGCCCAAAGCCAACAGCAAACGGTCGGCGACG 897176 Query 33426 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCC 33485 || || | |||| ||||| | || ||||| || | || | || || | ||| Sbjct 897175 AACTCGACATATTGGTTCATGAGGTCGGCGTTCATGCCGAGAAGACTTACAGGCAAAGCA 897116 Query 33486 ACA-GTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCT-AACGGTTT 33543 | | ||| | |||||| |||||| || || | || || || ||| |||| | Sbjct 897115 TCGCGGAAGTA-TTCTTGCTCAATGTCGACGGCTTCAGTGATGATTC-TCTCAACGATAG 897058 Query 33544 CTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGAC 33603 | || || | | || || | || | | ||| || |||||| ||||| || Sbjct 897057 CACGGCTAGGGCGGTTCTGCAAGTGGCTGAATAGGAGACAGGCAAAATCGGTGTGCATAC 896998 Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || | ||| | |||||| || || || || || ||||| || |||||||||| Sbjct 896997 CCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAGCCCAGGCATGAGCCCACGCTTTT 896938 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || || || || || ||||||| ||||| || ||||| |||| Sbjct 896937 TCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAAGACACCTTCAACAGCAGCGAAGG 896878 Query 33724 CAATAAGTCTCTCTCCATA---------ACCGGCGCTGTCATGTATCCACTTTTGAGCCC 33774 |||| || | |||| | | | || ||||| ||||| | |||| Sbjct 896877 CAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCTG------ATCCAACGAAGTGCCC 896824 Query 33775 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 33834 | | |||||||| | | || || || ||||| || || ||| ||| | Sbjct 896823 ACTTAGCCTTCTTGCGAATGGAGGGAATGGTGAAGATGGCGTTGAACAGAAAGTCGGCCT 896764 Query 33835 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 33894 | ||||| ||||| || || ||||| |||| |||| ||| | || || |||||||||| Sbjct 896763 CTTTACTGTCTTTCACGTATGTATCAATCAGAAGAGAATAAGTCTCAGAGTGAATGTTTT 896704 Query 33895 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAA 33954 | || ||||| || |||||||||||| | ||||||| ||| || || || | Sbjct 896703 CCATCATAATCTGGAAGCCGTAGAAACATTTGGCCTCGGGAATACCAACCTCACCACTGA 896644 Query 33955 ATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACAT 34014 |||| || | | ||| ||||| || || |||||||| || ||||| || || | ||| Sbjct 896643 ATCGCTCAACGAGATTCTCATTGACAATGCCATCACTAGCAGCAAAGAAAGCAAGAACAC 896584 Query 34015 GTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTT---ATTCCAATCATTGATATCTTTA 34070 | | ||| ||| | ||||| | || | || || | ||| || | | || ||| Sbjct 896583 GGGACACAAAGTATCTCTCGTCATCGT-TCAGCTTGTGCTCCCAGTCGTGAGTGTCCTTA 896525 Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 34130 || || | ||| || | ||||||||||| ||||| || || || || | ||| Sbjct 896524 CCTAGGTCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGCTTTCTTGTAAGCCTGCCAA 896465 Query 34131 ATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || | || | ||| ||||| | |||||| | ||||||||| Sbjct 896464 ATCGAGTTGTACTTGATCGGGAACAAAACAAACCGGTTTGGATTT 896420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| || || || |||| || || || ||||||||||| || || || || Sbjct 1207926 GTGAATTGAATCGGTGCCGAAGCGGCTTGAGTGCGCAGATAGTACATACCGGTCTTGAGC 1207867 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG--GAATAACTCGGATCTGCTA 62163 || | ||| ||||| || ||||||||||| || ||| | | |||| ||| | Sbjct 1207866 CCTTTAGACCAGCCGTAGAAGTGCATACTCGTAAGCTTGCCCATTGTGGGGGAT-TGC-A 1207809 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 ||| ||| |||| | |||||||| |||||||| | ||| ||| | || ||||| | | Sbjct 1207808 TATAGATGTTCAGACTCTGACTTTGGTCGATGAAAGGTCCTCTGCCAGCGGCCATATCGA 1207749 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAA 62250 | ||| |||||| || ||||||| Sbjct 1207748 TAATCACCTTTTGACTGATCTCCCAAA 1207722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817474036480