Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 239 6e-58 >seq1 Length=2987201 Score = 239 bits (264), Expect = 6e-58 Identities = 735/1120 (66%), Gaps = 44/1120 (4%) Strand=Plus/Minus Query 65813 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 65872 |||||||||||| | ||| | || || ||||| ||| |||||||| || || || Sbjct 1206937 CTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCAT 1206878 Query 65873 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCT 65931 ||| || ||||||| || |||||| || | ||| || | ||| | | || |||||| Sbjct 1206877 GAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAA-GCTTCTGAGCCT 1206819 Query 65932 TTATTATA-GA------TTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGT 65981 |||| || || ||| | | |||||| ||| ||||| || | | ||| Sbjct 1206818 TTATGGTACGACGGCCCTTTCCAGC-CTTTTCATACTTCTCGTAAAGAGCCTCAAAT--- 1206763 Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| |||| | | | ||||| ||||| | || ||||| | | | Sbjct 1206762 ------TCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGTC 1206709 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || | || | || || || ||||| || ||||| ||||||||||| || || || Sbjct 1206708 CAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAAA 1206649 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||| | | | | || || || || ||| || || |||| || | | Sbjct 1206648 AGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGAAC 1206589 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 | ||| | ||||||||| || | ||| ||||| | | ||||| || ||||| || || Sbjct 1206588 ACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCACCT 1206529 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 || || | ||| | ||| ||||| || || || | |||||| |||| ||| ||||| || Sbjct 1206528 TGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTCGAG 1206469 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA--CTAATTGATAGAC 66339 || || || || || | ||||| ||| | || || || ||| | | ||| | | Sbjct 1206468 GTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTGA--GCC 1206411 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | || || || || || ||||| | ||||| | || | ||||| || || |||| Sbjct 1206410 CAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATACCCT 1206351 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGACTAGTT 66458 | ||| ||| ||| ||||||| | || || || | || ||| || | |||| Sbjct 1206350 CAATAGAATCGTCCTTCATGTTTACGAGGAAGCA-CGAGCTCATCTGAGGCTTTGGAGTT 1206292 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || ||||| | ||||| || || ||||| || || |||| | || | || ||||| Sbjct 1206291 CCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGTAA 1206232 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACA 66576 ||||| | || | ||| || || | |||||| || | | ||| ||||| | || Sbjct 1206231 GTCTCTACGACTTTGGGTATGTC--ATCGCCATGAATACCAATGGAGACGCGCATGATCA 1206174 Query 66577 TGTGCTGAGGTCTTTCAACGATCTTGTTG-TTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 | |||||||| | || || ||| | |||| ||||| ||||||||| || | Sbjct 1206173 TATGCTGAGGGCGCTCGT-GAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTAGC 1206115 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 ||||| ||||||||||||||||| ||||| || || |||| || | |||||||| Sbjct 1206114 GTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTTGAGC 1206055 Query 66696 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-----GAAATAATCGGAGAAT 66750 | || || || | || || || || |||| | ||||| || ||||||| Sbjct 1206054 TCTTCAGCATGCTTCTGGACAACGTC----GT-ATACCTCTTGGGAAATCATTGGAGAAT 1206000 Query 66751 GTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 66810 | || |||| |||||| |||||| ||| | |||||| || || | || || | || Sbjct 1205999 GCTTGTCATTGCGAGGATTCACATAGCGGAAAAGATCCTCAATGACCTGGCTGAACACTT 1205940 Query 66811 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCG 66870 ||||||| | |||||| ||||| || || || |||| || || | |||||| || | Sbjct 1205939 TTTTTGTCTGTTTGTGGAGATTAGACACTGCAATTCGTGCAGCAAGCTGGGCATAGTCAG 1205880 Query 66871 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAG 66910 | || ||||| | || ||| | ||||| ||||| Sbjct 1205879 GGTGGACCGTAGTCATTGACGCAGCTGTCTCGGCAGCCAG 1205840 Score = 156 bits (172), Expect = 6e-33 Identities = 365/547 (67%), Gaps = 8/547 (1%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || |||||| ||| | |||||| || | ||| | ||||||||| || || || Sbjct 897020 ACAGGCAAAATCGGTGTGCATACCCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAG 896961 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || ||||||||||| ||||| || || || ||||| || ||| ||||| Sbjct 896960 CCCAGGCATGAGCCCACGCTTTTTCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAA 896901 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATG 36333 | ||||| || || || |||||||| || | |||| | | | || ||| Sbjct 896900 GACACCTTCAACAGCAGCGAAGGCAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCT 896841 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| | |||||||| | | || || || || || || Sbjct 896840 GATCCAACGAAGTGCCCACTTAGCCTTCTTGCGAATGGAGGGAATGGTGAAGATGGCGTT 896781 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 || ||| ||| || ||||| ||||| || ||||||||||||| |||| ||| | Sbjct 896780 GAACAGAAAGTCGGCCTCTTTACTGTCTTTCACGTATGTATCAATCAGAAGAGAATAAGT 896721 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 || || ||||||||||| || || || || |||||||||||| | ||||||| ||| Sbjct 896720 CTCAGAGTGAATGTTTTCCATCATAATCTGGAAGCCGTAGAAACATTTGGCCTCGGGAAT 896661 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 || || || ||||| || | | ||| ||||| || || || ||||| || || Sbjct 896660 ACCAACCTCACCACTGAATCGCTCAACGAGATTCTCATTGACAATGCCATCACTAGCAGC 896601 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGTTT---ATTCC 36629 ||| || || | ||| | | ||| ||| | |||| | || | || || | || Sbjct 896600 AAAGAAAGCAAGAACACGGGACACAAAGTATCTCTCGTCATCGT-TCAGCTTGTGCTCCC 896542 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | || | | || ||| || || | ||| || | ||||||||||| ||||| || | Sbjct 896541 AGTCGTGAGTGTCCTTACCTAGGTCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGCTT 896482 Query 36690 TTTTATA 36696 | || || Sbjct 896481 TCTTGTA 896475 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || || || |||| || || || ||||||||||| || || || || Sbjct 1207926 GTGAATTGAATCGGTGCCGAAGCGGCTTGAGTGCGCAGATAGTACATACCGGTCTTGAGC 1207867 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG--GAATAACTCGGATCTGCTA 64956 || | ||| ||||| || ||||||||||| || ||| | | |||| ||| | Sbjct 1207866 CCTTTAGACCAGCCGTAGAAGTGCATACTCGTAAGCTTGCCCATTGTGGGGGAT-TGC-A 1207809 Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016 ||| ||| |||| | |||||||| |||||||| | ||| ||| | || ||||| | | Sbjct 1207808 TATAGATGTTCAGACTCTGACTTTGGTCGATGAAAGGTCCTCTGCCAGCGGCCATATCGA 1207749 Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAA 65043 | ||| |||||| || ||||||| Sbjct 1207748 TAATCACCTTTTGACTGATCTCCCAAA 1207722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172668365440