Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 102 9e-17 >seq1 Length=2987201 Score = 102 bits (112), Expect = 9e-17 Identities = 352/546 (64%), Gaps = 5/546 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| ||||| || | ||| || || || || |||| || ||| ||| || | Sbjct 897019 CAGGCAAAATCGGTGTGCATACCCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAGC 896960 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || || || ||||| || ||||| ||||| ||| || || Sbjct 896959 CCAGGCATGAGCCCACGCTTTTTCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAAG 896900 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 | |||||| || || || || || | | || || || || | | | |||| Sbjct 896899 ACACCTTCAACAGCAGCGAAGGCAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCTG 896840 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| | ||||| | || || || ||| | || | || ||| ||||| Sbjct 896839 ATCCAACGAAGTGCCCACTTAGCCTTCTTGCGAATGGAGGGAATGGTGAAGATGGCGTTG 896780 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || || | || ||| | ||| | ||||||||| || | |||||||| | Sbjct 896779 AACAGAAAGTCGGCCTCTTTACTGTCTTTCACGTATGTATCAATCAGAAGAGAATAAGTC 896720 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 ||||| || | || ||||| ||| ||||| |||||||||||| | || || | || Sbjct 896719 TCAGAGTGAATGTTTTCCATCATAATCTGGAAGCCGTAGAAACATTTGGCCTCGGGAATA 896660 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 || || | |||| ||| |||||||| |||||||| || ||||| || ||| Sbjct 896659 CCAACCTCACCACTGAATCGCTCAACGAGATTCTCATTGACAATGCCATCACTAGCAGCA 896600 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT---ATCCCAA 93568 || ||||| | | | | | ||| | | |||| ||||| || ||||| ||||| Sbjct 896599 AAGAAAGCAAGAACACGGGACACAAAGTATCTCTCGTCATCGTTCAGCTTGTGCTCCCAG 896540 Query 93569 TCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| || | || || || || | ||| ||| | |||||||| || || || ||||| Sbjct 896539 TCGTGAGTG-TCCTTACCTAGGTCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGCTTT 896481 Query 93628 TTTGTA 93633 ||||| Sbjct 896480 CTTGTA 896475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860688627840