Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 >seq2 Length=2890200 Score = 138 bits (152), Expect = 2e-27 Identities = 695/1086 (64%), Gaps = 61/1086 (6%) Strand=Plus/Minus Query 279331 AGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGA 279390 ||||| |||| ||||||||||| || |||| || ||||||||||| ||||||| | Sbjct 2626668 AGGAGGATGAGGAGGGTGAGGATCTCTGCAACTGCGAGTTCTCGCTCGCCTATGGTGCTA 2626609 Query 279391 AGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAAC---CGGTATGGTCTCA 279447 |||||||||| ||| ||| | | | |||||| ||||| || || || | Sbjct 2626608 AGATTCTGCTGAACCGTACTCAGATGCGCCTCAAGC---GCAACCGTCGATACGGCTTGT 2626552 Query 279448 TCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGG 279507 || ||||| || || |||||| |||||| ||||| |||||||| | || ||| | | Sbjct 2626551 GTGGACCCAACGGTGCTGGTAAGTCCACTCTTATGCGTGCCATTGCTGAGGGCCAGGTTG 2626492 Query 279508 AAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCT 279567 | || || || |||| ||| | | ||| || ||||| ||||| || || || Sbjct 2626491 AGGGCTTCCCCAACG---ACGAGCTCAAGACTGTCTATGTTGAGCATGATATTGATGGAA 2626435 Query 279568 CTCTCTCGGATAGCACTGTGTTCGACTTCCTAACGTC-TGA-CAAT----CAGGTTATGG 279621 ||| ||| || | || || | |||| ||||| ||| || | ||| | || Sbjct 2626434 CTCACTCCGACACCAACGTTCTTGACT-----ACGTCATGATCACTGCTGCAGATGCTG- 2626381 Query 279622 AAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAAT--GGTTTTGATGAAAG 279679 || || | ||||| | | || || | | ||| || ||| ||| Sbjct 2626380 ---TCGGCCCCAAGGAGGAGGTTCACGCCAAGCTCAA--CGAATTCGGCTTTACTGACGA 2626326 Query 279680 AATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT--- 279736 ||| | | |||| | ||||| || |||||||||||||||||||| || || Sbjct 2626325 GATGTGCGCTATGCCTATCACCTCTCTTTCTGGTGGTTGGAAGATGAAGCTTGCTCTTGC 2626266 Query 279737 CACTCGCGCCATTCTACTGCGT---GCCGATGTCCTACTGCTTGATGAGCCAACCAACCA 279793 |||| || | | || ||| || ||| | | || | |||||||| || ||||| Sbjct 2626265 CACT-GC-----TGTGCTTCGTAAGGCTGATATTTTGCTTTTGGATGAGCCTACAAACCA 2626212 Query 279794 CATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTC 279853 | |||| || |||||| |||||| | || |||||| | || | || | | || | Sbjct 2626211 CTTGGATACTGTCAACGTCGCCTGGTTGGTCAACTACCTCAACACT-TGTGG--TATTAC 2626155 Query 279854 TTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCA 279913 ||| ||||||| || |||||||| |||||| | || || | |||||| | Sbjct 2626154 CTCCATCATTGTGTCCCACGACTCCGGCTTCTTGGACAAGGTCACCCAGTACATCATCAA 2626095 Query 279914 CTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAA 279973 || | || || | |||||| |||| ||||||||||||| | | || || || Sbjct 2626094 CT---ACCAGAACTTCAAGCTCCACAAGTACATCGGCAACCTTACAGAGTTTGTCAAGAA 2626038 Query 279974 GCGCCCTGAGGCGGCC---GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATT 280030 | ||| | | ||| | |||| || || | | || | || | || || Sbjct 2626037 GTACCC---GCCTGCCAAATCTTACTTCGAGCTTGGTGCCTCCGAGGTTAACTTCGATTT 2625981 Query 280031 CCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCG 280090 ||||||||| || || || ||||| ||| | ||| | || ||| | ||| | Sbjct 2625980 CCCTGAGCCTGGTTTCCTCGAGGGTGTCAAGACCAAGCAGAAGGCTATCGTCAAGGTTTC 2625921 Query 280091 TGGCGTCTCCTTTGCTTATCCCAATGGCCCCAACATCTTCAG--CAGTGTCAACTC---G 280145 | ||| | || || |||| || | | | | ||| || | | ||| Sbjct 2625920 TAATGTCACATTCCAGTA-CCCAGGTACCTCGA-AGCCACAGATCACGGATATCTCATTC 2625863 Query 280146 CAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACC 280205 ||| ||| | ||| || |||| ||||||||| ||||| ||||| ||||||||||| Sbjct 2625862 CAGTGCTCTCTCTCCTCCCGTATTGCTGTCATTGGCCCCAACGGTGCCGGTAAGTCTACT 2625803 Query 280206 CTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCC 280265 ||||| || ||||| ||||| ||| | | || | || || | | || Sbjct 2625802 CTAATTAACGTCCTCACTGGTGAGCTTTTGCCTACCAATGGTGAGGTCTACACTCACGAG 2625743 Query 280266 AACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGAC 280325 ||| || || || |||||| |||||||| ||| ||||||||| |||||| ||||| Sbjct 2625742 AACTGCCGTATCGCCTACGTCAAGCAGCACGCATTCGCCCACATCGATAACCACTTGGAC 2625683 Query 280326 ATGACTCCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGT 280384 | |||||||| | | ||||| |||||||| | | || | ||| |||| | ||| | | Sbjct 2625682 AAGACTCCTAGCGAGTACATCCAGTGGCG-TTTCCAGACTGGTGAGGACCGCGAGACCAT 2625624 Query 280385 GGATCG 280390 |||||| Sbjct 2625623 GGATCG 2625618 Score = 105 bits (116), Expect = 1e-17 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 ||||||| || | ||||| | |||||||| || |||||||||||||| ||||| | Sbjct 2625285 TGGGTCTTGAGGCTGAGTTGGTCTCCCACTCTCGTATCCGCGGTCTTTCTGGTGGCCAAA 2625226 Query 280738 AGGTCAAACTTGTCATCGGAG-CAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 ||||||| |||||| | | | | || | ||||| | |||||| ||||||| ||||| Sbjct 2625225 AGGTCAAGCTTGTCTTGGCTGCCTGCAC-ATGGCAGCGTCCTCACTTGATCGTCCTCGAT 2625167 Query 280797 GAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||| ||||| ||||||| || ||||| || ||| Sbjct 2625166 GAGCCTACTAACTACTTGGACCGTGACTCTCTGGGTGCCCTG 2625125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836589293456