Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 183 6e-41 seq3 165 2e-35 seq2 131 3e-25 >seq1 Length=2987201 Score = 183 bits (202), Expect = 6e-41 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| ||||||||||| || |||||||| || || ||| Sbjct 2570402 CCACCACGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2570343 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || ||| Sbjct 2570342 AGGGTGCGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGA 2570283 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| ||||| ||| || |||||||| ||||| ||| || || || Sbjct 2570282 ATGCCTTCCTTGTCGCTGATCTTGCTCTTCACAGCCTCGATCGTGTC-GCTAGACTCGAC 2570224 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||| ||| |||||||| Sbjct 2570223 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCAT 2570176 >seq3 Length=2072284 Score = 165 bits (182), Expect = 2e-35 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 |||| || || || || || | ||||| || || |||||||| ||||||||||| || | Sbjct 540879 AATTGCCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGT 540820 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 |||| || || | ||||| || | |||||| || || || ||||| | |||||||| | Sbjct 540819 CGGAAAGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAG 540760 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GAT 68408 | ||||| ||||||||||| ||||| |||||| ||||| |||||||| ||| || Sbjct 540759 GGGGAATTCCTTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTC-GCTAGAC 540701 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| | || ||||| || ||||| | ||||||| ||| |||||||| Sbjct 540700 TCTACTTCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCAT 540648 >seq2 Length=2890200 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || || ||||| || ||||| Sbjct 724323 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAA 724382 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 724383 AGGGTGCGGCCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 724442 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || ||||| ||| || |||||||||||||| || || || Sbjct 724443 ATGCCCTCCTTATCGCTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACC 724502 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || ||||| ||||| || | ||| |||||||| Sbjct 724503 TCGAGGGTAATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCAT 724549 Score = 123 bits (136), Expect = 5e-23 Identities = 663/1039 (64%), Gaps = 39/1039 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | | || ||| |||||| |||||| || || ||| ||| || Sbjct 2625654 CGCCACTGGATGTACTCGCTAGGAGTCTTGTCCAAGTGGTTATCGATGTGGGCGAATGCG 2625713 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| ||||| || || || ||| || | | || || || || Sbjct 2625714 TGCTGCTTGACGTAGGCGATACGGCAGTTCTCGTGAGTGTAGACCTCACCATTGGTAGGC 2625773 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| || || || |||| ||| || ||||| ||||||||||| Sbjct 2625774 AAAAGCTCACCAGTGAGGACGTTAATTAGAGTAGACTTACCGGCACCGTTGGGGCCAATG 2625833 Query 225161 ACGCCAATCCGGGATGA-------CATTGCAACCTGCGAGTTCACGTTG-CTGAAGATCT 225212 || |||| ||||| || || || || || || || ||| ||| | | Sbjct 2625834 ACAGCAATACGGGAGGAGAGAGAGCACTGGAA--TGAGATATC-CGTGATCTGTGGCTTC 2625890 Query 225213 CAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGG 225272 ||| | | |||| || | || | | ||| | ||| || | ||||| Sbjct 2625891 GAGGTACC--TGGGTACTGGAATGTGACATTAGAAACCTTGACGATAGCCTTCTGCTTGG 2625948 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCA 225332 | | |||||| ||||| || ||||| ||||| || | || | | | | | | Sbjct 2625949 TCTTGACACCCTCGAGGAAACCAGGCTCAGGGAAATCGAAGTTAACCTCGGAGGCACCAA 2626008 Query 225333 GGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 | ||| |||||||| |||| | |||| ||| || || | | ||||| |||| Sbjct 2626009 GCTCGAAGTAAGATTTGGCAGGC--GGGTA-CTTCTTGACAAACTCTGTAAGGTTGCCGA 2626065 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAA 225449 || ||| |||||||| ||||| | || ||| | | | | | || ||| | Sbjct 2626066 TGTACTTGTGGAGCTTGAAGTTCTGGTAGT--TGATGATGTACTGGGTGACCTT-GTCCA 2626122 Query 225450 GGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCG 225509 |||||| ||||||||||||||||||||||| | | | | || | ||||||| Sbjct 2626123 AGAAGCCGGAGTCGTGGGACACAATGATGGAGGTAA--TACCACAAGTG-TTGAGGTAGT 2626179 Query 225510 TGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGA 225569 ||| | ||| || |||||| |||| |||||||||||| || |||| ||||| | Sbjct 2626180 TGACCAACCAGGCGACGTTGACAGTATCCAAGTGGTTTGTAGGCTCATCCAAAAGCAAAA 2626239 Query 225570 TGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACA 225629 | ||||| | | || | || | |||| |||||||| ||||| || || || | Sbjct 2626240 TATCAGCCTTACGAAGCACAGCAGTGGCAAGAGCAAGCTTCATCTTCCAACCACCAGAAA 2626299 Query 225630 GGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGTACTCCAGGAGCGTCT 225686 | ||| ||| | || || || | || ||||| |||||| | || |||| | Sbjct 2626300 GAGAGGTGATAGG--CATAGCGCACATCT-CGTCAGTAAAGCCGAATTCGTTGAGCTTGG 2626356 Query 225687 GGATAATGCGCTCGGGAGAGCTGCGAGCGGCAAC-GTTGGGGTCGGACGAGAGGTAATCA 225745 | || ||| | || ||| | ||| | | | || | | || ||| ||| Sbjct 2626357 CGTGAACCTCCTCCTTGGGGC--CGA-CAGCATCTGCAGCAGT-GATCATGACGTAGTCA 2626412 Query 225746 TATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGC 225805 ||| | |||| ||| || | ||||| || || || || || || ||| |||| Sbjct 2626413 AGAACGTTGGTGTCGGAGTGAGTTCCATCAATATCATGCTCAACATAGACAGTCTTGAGC 2626472 Query 225806 TGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTC 225865 | | | |||||||||||| | |||||| | ||||| ||||| | || || | Sbjct 2626473 TCGT---CGTTGGGGAAGCCCTCAACCTGGCCCTCAGCAATGGCACGCATAAGAGTGGAC 2626529 Query 225866 TTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGC 225925 || || || |||||||| || | |||||| || |||||||| | | | Sbjct 2626530 TTACCAGCACCGTTGGGTCCACACAAGCCGTATCGACGGTTGCGCTTGAGGCGCATCTGA 2626589 Query 225926 GTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCC 225985 || |||||| || ||||| |||||||||| || ||||||||||| | ||| || ||| Sbjct 2626590 GTACGGTTCAGCAGAATCTTAGCACCATAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 2626649 Query 225986 TCACCCTCCTCGGTCTCCT 226004 ||||||||||| ||||| Sbjct 2626650 TCACCCTCCTCATCCTCCT 2626668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622215675520