Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 5e-18
seq3 95.1 3e-14
seq2 93.3 1e-13
>seq1
Length=2987201
Score = 107 bits (118), Expect = 5e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | || | |||| || || ||||| || ||||| | |
Sbjct 2570402 CCACCACGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2570343
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||||||||| || | ||
Sbjct 2570342 AGGGTGCGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGA 2570283
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| || || ||| || ||| ||||| || || | ||||| || || ||
Sbjct 2570282 ATGCCTTCCTTGTCGCTGATCTT-GCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGAC 2570224
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| |||||||| || || ||||||| ||| ||||||||
Sbjct 2570223 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCAT 2570176
>seq3
Length=2072284
Score = 95.1 bits (104), Expect = 3e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | || || | ||| | ||| || |||||||| || |||||||
Sbjct 540874 CCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 540815
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || ||||| ||||||||||| | ||
Sbjct 540814 AGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGA 540755
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || || ||| || || || || || | ||||| || ||||||
Sbjct 540754 ATTCCTTCCTTGTCAGAGATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACT 540695
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || ||||| || || | ||||||| ||| ||||||||
Sbjct 540694 TCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCAT 540648
>seq2
Length=2890200
Score = 93.3 bits (102), Expect = 1e-13
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | |||| || || || || || || |||||||
Sbjct 724323 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAA 724382
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||||||||| || | |||
Sbjct 724383 AGGGTGCGGCCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 724442
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| || || ||||| ||| || ||| ||||| || || | || ||||| || ||
Sbjct 724443 ATGCCCTCCTTATCGCTGATCTT-GCTCTTCACAGCCTCGATGGTGTCACTCGACTCCAC 724501
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || ||||| || ||||| || || | ||| ||||||||
Sbjct 724502 CTCGAGGGTAATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCAT 724549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654158170848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |