Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 6e-23
seq3 109 1e-18
seq2 109 1e-18
>seq1
Length=2987201
Score = 123 bits (136), Expect = 6e-23
Identities = 153/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | |||||| || |||||||| |||| ||||||||||| | ||
Sbjct 2570396 CGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 2570337
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| ||||||||||| |||||||||||||| || ||| |||
Sbjct 2570336 CGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 2570277
Query 199529 T-CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
| || | ||| ||||| |||||| | |||| ||||| | | || || || |
Sbjct 2570276 TCCTTGTCGCTG-ATCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAG 2570218
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTT 199614
||||| ||||| |||||||| || ||
Sbjct 2570217 GGTGATAGTCTTCCCCGTGAGGGTCTT 2570191
>seq3
Length=2072284
Score = 109 bits (120), Expect = 1e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| ||||| ||||||||||||| ||||||||| | | ||| | ||||| || ||||||
Sbjct 540850 TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTCAAGCTGC 540791
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || || |||||||||||||| ||||| || ||||||||| || |||||
Sbjct 540790 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGAGATCTTA 540731
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || | || | |||||| | | ||||| || | ||| || ||||| |||||
Sbjct 540730 CTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTTGCCCGTT 540671
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| || || | ||||| ||
Sbjct 540670 AACGTCTTGATGAAAATCTG 540651
>seq2
Length=2890200
Score = 109 bits (120), Expect = 1e-18
Identities = 145/201 (72%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| ||||| |||||||| || | ||||||||| | | || | |||||
Sbjct 724338 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCA 724397
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT----TCCTTCTCG 199533
|| |||||||| ||||||||||| |||||||||||||| || || ||||| |||
Sbjct 724398 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCG 724457
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|| ||||| |||||| | |||| |||||| | | || || || | || ||
Sbjct 724458 CT----GATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAAT 724513
Query 199594 CGTCTTACCCGTGAGAGTTTT 199614
||||||||||| || |||||
Sbjct 724514 AGTCTTACCCGTCAGGGTTTT 724534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921358321072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |