Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 123 6e-23 seq3 109 1e-18 seq2 109 1e-18 >seq1 Length=2987201 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || |||||||| |||| ||||||||||| | || Sbjct 2570396 CGAAGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 2570337 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| |||||||||||||| || ||| ||| Sbjct 2570336 CGGCCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCT 2570277 Query 199529 T-CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 | || | ||| ||||| |||||| | |||| ||||| | | || || || | Sbjct 2570276 TCCTTGTCGCTG-ATCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAG 2570218 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTT 199614 ||||| ||||| |||||||| || || Sbjct 2570217 GGTGATAGTCTTCCCCGTGAGGGTCTT 2570191 >seq3 Length=2072284 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| ||||||||||||| ||||||||| | | ||| | ||||| || |||||| Sbjct 540850 TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTCAAGCTGC 540791 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || |||||||||||||| ||||| || ||||||||| || ||||| Sbjct 540790 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGAGATCTTA 540731 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || | || | |||||| | | ||||| || | ||| || ||||| ||||| Sbjct 540730 CTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTTGCCCGTT 540671 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || | ||||| || Sbjct 540670 AACGTCTTGATGAAAATCTG 540651 >seq2 Length=2890200 Score = 109 bits (120), Expect = 1e-18 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| |||||||| || | ||||||||| | | || | ||||| Sbjct 724338 AGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCA 724397 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT----TCCTTCTCG 199533 || |||||||| ||||||||||| |||||||||||||| || || ||||| ||| Sbjct 724398 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCG 724457 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| |||||| | |||| |||||| | | || || || | || || Sbjct 724458 CT----GATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAAT 724513 Query 199594 CGTCTTACCCGTGAGAGTTTT 199614 ||||||||||| || ||||| Sbjct 724514 AGTCTTACCCGTCAGGGTTTT 724534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921358321072