Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 seq3 132 5e-26 seq2 107 2e-18 >seq1 Length=2987201 Score = 201 bits (222), Expect = 1e-46 Identities = 541/824 (66%), Gaps = 19/824 (2%) Strand=Plus/Minus Query 132624 TTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||||||| ||||| || ||||| | | || ||| | |||||| || || || || Sbjct 897290 TTTCTCAAAGAAATTGGTCTTTCCAGCAAGAGAGATGTTCTCCATAAAGTCAAACGGATT 897231 Query 132684 GGCTGTGTTGTAGT---GCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || |||||| ||||| ||| | | | | || |||| | |||||| ||||| Sbjct 897230 GGTCACATTGTAGACGCGCTTGTGGCCCA--AAGCCAAC-AGCAAACGGTCGGCGACGAA 897174 Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTC 132800 ||||| ||||| |||| ||| || | || || |||| || |||| || || Sbjct 897173 CTCGACATATTGGTTCATGAGGTCGGCGTTCATGCCGAGAAGACTTACAGGCAAAGCATC 897114 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 | || | |||||| ||| |||| || || |||| |||| | |||| || Sbjct 897113 GCGGAAGTATTCTTGCTCAATGTCGACGGCTTCAGTGATGATTCTCTCAACGATAGCACG 897054 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| || || | | ||| || |||| | | || ||||| ||| |||| ||||| Sbjct 897053 GCTAGGGCGGTTCTGCAAGTGGCTGAATAGGAGACAGGCAAAATCGGTGTGCATACCCTC 896994 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | ||||| ||||||||| |||||| | || |||||||| || || ||||| || Sbjct 896993 ATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAGCCCAGGCATGAGCCCACGCTTTTTCAG 896934 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || || | || || ||| |||||||| || || || || ||||| || | Sbjct 896933 CCAGAAGATTGATGCAAACGAGCCACTGAAGAAGACACCTTCAACAGCAGCGAAGGCAAT 896874 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||||||| |||| || | || | | |||||| || || ||||| | ||||| Sbjct 896873 TAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCTGATCCAACGAAGTGCCCACTTAGCCTT 896814 Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160 | | | | || || || ||||||||| |||| | | ||||| | Sbjct 896813 CTTGCGAATGGAGGGAATGGTGAAGATGGCGTTGAACAGAAAGTCGGCCTCTTTACTGTC 896754 Query 133161 ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 |||||| || || || || ||||| | || ||||| | ||| ||||| || Sbjct 896753 TTTCACGTATGTATCAATCAGAAGAGAATAAGTCTCAGAGTGAATGTTTTCCATCATAAT 896694 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCG-----ACCACCTGCACTTCTTGAGCGAAACGC 133275 || |||||||| || || |||||| |||| | ||| || ||| ||| Sbjct 896693 CTGGAAGCCGTAGAAACATTTGGCCTCGGGAATACCAACCTCACCACT-----GAATCGC 896639 Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335 || || ||||| || ||||| ||||| || || || || || || || || || | Sbjct 896638 TCAACGAGATTCTCATTGACAATGCCATCACTAGCAGCAAAGAAAGCAAGAACACGGGAC 896579 Query 133336 ATGAAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 | || | | ||||| ||||||| | ||||||||||| | |||||||| ||| Sbjct 896578 ACAAAGTATCTCTCGTCATCGTTCAGCTTGTGCTCCCAGTCGTGAGTGTCCTTACCTAGG 896519 Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 || | |||||| | |||||||| |||||||||||||| ||||| Sbjct 896518 TCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGCTTTCTTGTA 896475 Score = 129 bits (142), Expect = 6e-25 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||| | || || |||||||| || || |||||| | || |||||| | | | Sbjct 2570176 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 2570235 Query 38304 GACAGCGTGCAAACGCT-TAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| || | | ||| | |||| || ||| |||||| || || ||||| | |||| Sbjct 2570236 GACA-CGATCGAG-GCTGTGAAGAGCAAGATCAGCGACAAGGAAGGCATTCCGCCTGACC 2570293 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| ||||| | ||||||||| ||||||| Sbjct 2570294 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACA 2570353 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | ||||| || |||||||| || Sbjct 2570354 ACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTTCG 2570390 >seq3 Length=2072284 Score = 132 bits (146), Expect = 5e-26 Identities = 172/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||| | || ||| | |||||||| ||||| || | || || ||| | Sbjct 540644 AAAGATGCAGATTTTCATCAAGACGTTAACGGGCAAGACCATTACGCTAGAAGTAGAGTC 540703 Query 38300 CACCGACAGCGTGCAAACGCT-TAAAGAAAAAATCCTC-GACAAAGAGGGAATTCCCGCC 38357 | ||||| | | | ||| | |||| || ||| ||||| || ||||||||| | Sbjct 540704 TAGCGACACCATTGAG--GCTGTCAAGAGTAAGATCTCTGACAAGGAAGGAATTCCCCCT 540761 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||||||||| ||||| | || ||||| ||||| ||||| | || || || |||| Sbjct 540762 GACCAACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGACGATGGTCGTACTCTTTCCGAC 540821 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||||||| | || ||||||||||| || ||| | | |||||| Sbjct 540822 TACAACATCCAAAAGGAGTCCACTCTGCATTTGGTTCTACGTCTCCGTGGCGGC 540875 >seq2 Length=2890200 Score = 107 bits (118), Expect = 2e-18 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||| | ||||| || ||||| || || || ||| |||| || ||| | | Sbjct 724549 ATGCAGATCTTCATTAAAACCCTGACGGGTAAGACTATTACCCTCGAGGTGGAGTCGAGT 724490 Query 38304 GACAGCGTGCAAACGCT-TAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| | | | ||| | |||| || ||| ||| || ||||| || |||||| ||| Sbjct 724489 GACACCATCGAG--GCTGTGAAGAGCAAGATCAGCGATAAGGAGGGCAT-CCCGCCTGAC 724433 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| ||||| || || | |||||||| ||||||| Sbjct 724432 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGATGATGGCCGCACCCTTTCCGACTAC 724373 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||||| | || || || |||||||| ||| Sbjct 724372 AACATTCAGAAGGAGTCTACTCTTCACTTGGTGCTCCGT 724334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172699965440