Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 5e-24
seq1 98.7 2e-15
>seq3
Length=2072284
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||||||||| ||||| || ||||| |||| |||||| | ||||| || ||||||
Sbjct 540850 TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTCAAGCTGC 540791
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| || || |||||||| || ||||| ||||| ||||| || ||
Sbjct 540790 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGAGATCTTA 540731
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|||||| |||||||||||| | || ||||| || |||| ||||| || ||
Sbjct 540730 CTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTTGCCCGTT 540671
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || || | ||| | |||||
Sbjct 540670 AACGTCTTGATGAAAATCTGCAT 540648
>seq1
Length=2987201
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || |||||||| || || || ||||| || | || || | ||||| ||||||||
Sbjct 2570379 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCGTCGAGCTG 2570320
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || || ||||| || ||||||||||| ||||| || ||
Sbjct 2570319 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCGCTGATCTT 2570260
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || ||| || ||||| | || || |||||||| | ||||| || ||
Sbjct 2570259 GCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAGGGTGATAGTCTTCCCCGT 2570200
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || | ||| | |||||
Sbjct 2570199 GAGGGTCTTGATGAAGATCTGCAT 2570176
Score = 93.3 bits (102), Expect = 9e-14
Identities = 194/288 (67%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||| ||| | |||| | ||||||| ||||||||| | || |||| ||| ||||
Sbjct 1206648 TTTTCATGGCCCTTTGGATTCCCGATCTGTTCATGAAGCGCGTCAAAGCGGATGCTGATT 1206707
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | || ||||| ||| ||||| |||| ||| ||||| || || || |
Sbjct 1206708 GGACACTTATGTGCCCCAACGAATGCCCTGGCCTTGCTGACGTTTACGGAGATGAATTTG 1206767
Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGGAA-GAGCCAAAAAGGTCGTG-----AAGG 160760
|| ||||||| || | || ||||| | |||| | ||| ||||| ||||
Sbjct 1206768 AGGCTCTTTACGAGAAGTATGAAAAGGCTGGAAAGGGCC------GTCGTACCATAAAGG 1206821
Query 160761 CCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCG 160820
| || | || ||| | || |||| || || |||| |||| ||||| ||
Sbjct 1206822 CTCAGAAGCTTTGGTACGCTATTCTTGAGGCTCAGACCGAGACTGGTAACCCCTTCATGC 1206881
Query 160821 CATACAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868
||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 1206882 TCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAATCTTGGAA 1206929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481372556272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |