Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 127 5e-24 seq1 98.7 2e-15 >seq3 Length=2072284 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||||||||| ||||| || ||||| |||| |||||| | ||||| || |||||| Sbjct 540850 TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTCAAGCTGC 540791 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || || |||||||| || ||||| ||||| ||||| || || Sbjct 540790 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGAGATCTTA 540731 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| |||||||||||| | || ||||| || |||| ||||| || || Sbjct 540730 CTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTTGCCCGTT 540671 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| | ||||| Sbjct 540670 AACGTCTTGATGAAAATCTGCAT 540648 >seq1 Length=2987201 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| || | || || | ||||| |||||||| Sbjct 2570379 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCGTCGAGCTG 2570320 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||| || ||||||||||| ||||| || || Sbjct 2570319 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCGCTGATCTT 2570260 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||| || ||||| | || || |||||||| | ||||| || || Sbjct 2570259 GCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAGGGTGATAGTCTTCCCCGT 2570200 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || | ||| | ||||| Sbjct 2570199 GAGGGTCTTGATGAAGATCTGCAT 2570176 Score = 93.3 bits (102), Expect = 9e-14 Identities = 194/288 (67%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||| ||| | |||| | ||||||| ||||||||| | || |||| ||| |||| Sbjct 1206648 TTTTCATGGCCCTTTGGATTCCCGATCTGTTCATGAAGCGCGTCAAAGCGGATGCTGATT 1206707 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| ||| | || ||||| ||| ||||| |||| ||| ||||| || || || | Sbjct 1206708 GGACACTTATGTGCCCCAACGAATGCCCTGGCCTTGCTGACGTTTACGGAGATGAATTTG 1206767 Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGGAA-GAGCCAAAAAGGTCGTG-----AAGG 160760 || ||||||| || | || ||||| | |||| | ||| ||||| |||| Sbjct 1206768 AGGCTCTTTACGAGAAGTATGAAAAGGCTGGAAAGGGCC------GTCGTACCATAAAGG 1206821 Query 160761 CCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCG 160820 | || | || ||| | || |||| || || |||| |||| ||||| || Sbjct 1206822 CTCAGAAGCTTTGGTACGCTATTCTTGAGGCTCAGACCGAGACTGGTAACCCCTTCATGC 1206881 Query 160821 CATACAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 ||||||||||| | |||||||| ||||||||||| |||||| Sbjct 1206882 TCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAATCTTGGAA 1206929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481372556272