Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 >seq1 Length=2987201 Score = 134 bits (148), Expect = 2e-26 Identities = 521/810 (64%), Gaps = 14/810 (2%) Strand=Plus/Minus Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || |||||||| ||||| || || | ||||| || |||||| |||| |||| | | Sbjct 1206894 GCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTAC 1206835 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA--GTAT 48117 |||| || ||||||||| | | | || | | | ||| || || ||| Sbjct 1206834 CAAAGCTTCTGAGCCTTTATGGTACGACGGCCCTTTCCAGCCTTTTCATACTTCTCGTAA 1206775 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 | | | |||||||||||| || || || | | | | ||||| ||||| || || |||| Sbjct 1206774 AGAGC--CTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACA 1206717 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | | || |||||| |||| ||| || | |||| || | ||| || |||||||| | Sbjct 1206716 TAAGTGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGG 1206657 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | || || | ||| | | | | ||||| ||||| ||| | || || | || Sbjct 1206656 CCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAA 1206597 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 |||| | | ||| ||||||| || || | || || || | |||| || || || | Sbjct 1206596 AGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGT 1206537 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | || ||||| || | || | ||||| ||||| || || | ||||| || | ||| | Sbjct 1206536 TCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCC 1206477 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA--CTAAT 48475 |||| || | || || || || | ||||| ||| |||| | || ||| | | Sbjct 1206476 CATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACAC 1206417 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 || | || || ||||| || || || || || || || | || || ||||| || Sbjct 1206416 TG--AGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTA 1206359 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAG-ACATTTGCGGAT 48594 ||| || || ||| ||| || |||| |||| || || | || || ||| || || | Sbjct 1206358 AATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGC-ACGAGCTCATCTGAGGCT 1206300 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 |||||||| ||| | || || || || || || | || |||| | || | | Sbjct 1206299 TTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAA 1206240 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTG--ATGTATACCTATAGATACACG 48712 || || || || || | | ||| ||| | ||| ||||| || || || || Sbjct 1206239 GGTTGTAAGTCTC--TACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCG 1206182 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||| | ||||| ||||| | || || ||| ||||| ||||| | || || Sbjct 1206181 CATGATCATATGCTGAGGGCGCTCGTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCG 1206122 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || | ||||| ||||||||||||||||| Sbjct 1206121 CTCTAGCGTTTTGAAACCAAAATAGTTGTA 1206092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108687578240