Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 134 2e-26
>seq1
Length=2987201
Score = 134 bits (148), Expect = 2e-26
Identities = 521/810 (64%), Gaps = 14/810 (2%)
Strand=Plus/Minus
Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059
|| |||||||| ||||| || || | ||||| || |||||| |||| |||| | |
Sbjct 1206894 GCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTAC 1206835
Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA--GTAT 48117
|||| || ||||||||| | | | || | | | ||| || || |||
Sbjct 1206834 CAAAGCTTCTGAGCCTTTATGGTACGACGGCCCTTTCCAGCCTTTTCATACTTCTCGTAA 1206775
Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177
| | | |||||||||||| || || || | | | | ||||| ||||| || || ||||
Sbjct 1206774 AGAGC--CTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACA 1206717
Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237
| | || |||||| |||| ||| || | |||| || | ||| || |||||||| |
Sbjct 1206716 TAAGTGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGG 1206657
Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297
| || || | ||| | | | | ||||| ||||| ||| | || || | ||
Sbjct 1206656 CCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAA 1206597
Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357
|||| | | ||| ||||||| || || | || || || | |||| || || || |
Sbjct 1206596 AGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGT 1206537
Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417
| || ||||| || | || | ||||| ||||| || || | ||||| || | ||| |
Sbjct 1206536 TCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCC 1206477
Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA--CTAAT 48475
|||| || | || || || || | ||||| ||| |||| | || ||| | |
Sbjct 1206476 CATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACAC 1206417
Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535
|| | || || ||||| || || || || || || || | || || ||||| ||
Sbjct 1206416 TG--AGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTA 1206359
Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAG-ACATTTGCGGAT 48594
||| || || ||| ||| || |||| |||| || || | || || ||| || || |
Sbjct 1206358 AATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGC-ACGAGCTCATCTGAGGCT 1206300
Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654
|||||||| ||| | || || || || || || | || |||| | || | |
Sbjct 1206299 TTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAA 1206240
Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTG--ATGTATACCTATAGATACACG 48712
|| || || || || | | ||| ||| | ||| ||||| || || || ||
Sbjct 1206239 GGTTGTAAGTCTC--TACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCG 1206182
Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772
||| | ||||| ||||| | || || ||| ||||| ||||| | || ||
Sbjct 1206181 CATGATCATATGCTGAGGGCGCTCGTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCG 1206122
Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTA 48802
|| | ||||| |||||||||||||||||
Sbjct 1206121 CTCTAGCGTTTTGAAACCAAAATAGTTGTA 1206092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108687578240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |