Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-20 >seq3 Length=2072284 Score = 116 bits (128), Expect = 3e-20 Identities = 319/485 (66%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| || || |||||||| || |||||| | || || |||| ||| | ||||| Sbjct 1756185 GTTGAGATCATCGCCAATGAGCAGGGTAACCGTGTCACCCCGTCTTTCGTTGCCTTCACT 1756244 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || | || | | || | |||||||| || || | || || | || || | || Sbjct 1756245 GATAAGGAGCGTCTAATCGGTGATGCTGCCAAGAACCAGGCTGCGCTCAACCCGAGAAAC 1756304 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| |||| |||||||| ||| | ||||| | |||| |||| | ||||| ||| Sbjct 1756305 ACTGTTTTCGATGCTAAGCGTCTTATTGGTCGTCGTTTCGATGAGACTACTGTCCAGAGC 1756364 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||| ||| ||||| ||| | | || | || || || | ||||| | | Sbjct 1756365 GATATCAAGAGCTGGCCCTTCAAGGTCATTGACAGAAACGGCAACCCATTCATTGAGGTT 1756424 Query 550292 -ACT--CATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | || || | || || | ||| || || | | ||||| | |||||| | Sbjct 1756425 GAGTACCTTGGAGAAACT----AAGACTTTCTCTCCTCAGGAGATTTCTGCCATGGTTCT 1756480 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | || ||||| | | ||| || ||| || | ||| | || || | Sbjct 1756481 TGTCAAGATGAAGGAGATCGCCGAGGCCAAGCTTGCCCAGAAGGTTGACAAGGCCGTCGT 1756540 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || || || || || ||||| |||||||| || || || |||||||| || Sbjct 1756541 CACTGTTCCTGCCTACTTCAACGACTCTCAACGTCAGGCCACCAAGGATGCTGGCTCCAT 1756600 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||| || ||||| |||||||||||||| || ||||| |||||||| ||||||| || Sbjct 1756601 TGCTGGCCTCAATGTCCTTCGTATTATCAACGAGCCTACCGCTGCTGCTATTGCATACGG 1756660 Query 550528 ACTTG 550532 |||| Sbjct 1756661 TCTTG 1756665 Score = 98.7 bits (108), Expect = 8e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || || || || ||||| || ||||| || || || || || Sbjct 232706 GCCGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCC 232765 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| |||||||| || || || |||||||||||||| || || ||||| ||||| || Sbjct 232766 GGAACCATTGCTGGTCTCAACGTCCTTCGTATTATCAACGAGCCCACTGCGGCTGCCATT 232825 Query 550520 GCATATGGACTTGATAA 550536 ||||| || ||||| || Sbjct 232826 GCATACGGCCTTGACAA 232842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295153847840