Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 2e-17
seq2 102 6e-17
seq1 95.1 9e-15
>seq3
Length=2072284
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
|||||| | || || | |||||||| || ||| ||| ||||| || ||||| || ||
Sbjct 540875 GCCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 540816
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | ||| | ||||| | |||||| || ||||| || || |||||||| || | |||
Sbjct 540815 AAGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGG 540756
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CT 48714
|| || |||||||| ||||| || |||| || || | || ||| ||
Sbjct 540755 AATTCCTTCCTTGTCAGAGATCTTACTCTTGACAG---CCTCA-ATGGTGTCGCTAGACT 540700
Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
| || || | |||||| || || ||||| || || || | ||||||||||||
Sbjct 540699 CTACTTCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCATC 540647
>seq2
Length=2890200
Score = 102 bits (112), Expect = 6e-17
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || || ||| || ||||| ||||| || || || | ||
Sbjct 724332 AGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGG 724391
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| ||||| || ||||| ||||| || || | || | |||||||
Sbjct 724392 CCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 724451
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| ||||| ||||| || |||| | | | || || ||||||||| | |||
Sbjct 724452 TTATCGCTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTA 724511
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769
|| || || ||||||| ||||| | || |||||||||||
Sbjct 724512 ATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCATCGT 724552
>seq1
Length=2987201
Score = 95.1 bits (104), Expect = 9e-15
Identities = 156/223 (70%), Gaps = 8/223 (4%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || |||||| ||| || || || ||||| ||||| || | ||
Sbjct 2570393 AGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 2570334
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| ||||| | |||||| ||||| || ||||| ||||| || || | |||| ||| |||
Sbjct 2570333 CCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 2570274
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724
|||||||| ||||| || |||| || | || || ||| ||| ||||| |
Sbjct 2570273 TTGTCGCTGATCTTGCTCTTCACAG---CCTC-GATCGTGTCGCTAGACTCGACCTCAAG 2570218
Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || || || ||||| | || || | || |||||||||
Sbjct 2570217 GGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCATC 2570175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937525717168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |