Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq2 102 6e-17 seq1 95.1 9e-15 >seq3 Length=2072284 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | |||||||| || ||| ||| ||||| || ||||| || || Sbjct 540875 GCCGCCACGGAGACGTAGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 540816 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | ||||| | |||||| || ||||| || || |||||||| || | ||| Sbjct 540815 AAGAGTACGACCATCGTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGG 540756 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CT 48714 || || |||||||| ||||| || |||| || || | || ||| || Sbjct 540755 AATTCCTTCCTTGTCAGAGATCTTACTCTTGACAG---CCTCA-ATGGTGTCGCTAGACT 540700 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | || || | |||||| || || ||||| || || || | |||||||||||| Sbjct 540699 CTACTTCTAGCGTAATGGTCTTGCCCGTTAACGTCTTGATGAAAATCTGCATC 540647 >seq2 Length=2890200 Score = 102 bits (112), Expect = 6e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| || || || | || Sbjct 724332 AGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGG 724391 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||| ||||| || || | || | ||||||| Sbjct 724392 CCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 724451 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || ||||| ||||| || |||| | | | || || ||||||||| | ||| Sbjct 724452 TTATCGCTGATCTTGCTCTTCACAGCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTA 724511 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || ||||||| ||||| | || ||||||||||| Sbjct 724512 ATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCATCGT 724552 >seq1 Length=2987201 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || |||||| ||| || || || ||||| ||||| || | || Sbjct 2570393 AGGCGAAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 2570334 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | ||||| | |||||| ||||| || ||||| ||||| || || | |||| ||| ||| Sbjct 2570333 CCATCGTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 2570274 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 |||||||| ||||| || |||| || | || || ||| ||| ||||| | Sbjct 2570273 TTGTCGCTGATCTTGCTCTTCACAG---CCTC-GATCGTGTCGCTAGACTCGACCTCAAG 2570218 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||||| | || || | || ||||||||| Sbjct 2570217 GGTGATAGTCTTCCCCGTGAGGGTCTTGATGAAGATCTGCATC 2570175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937525717168