Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 147 6e-30
seq3 96.9 1e-14
seq2 84.2 6e-11
>seq1
Length=2987201
Score = 147 bits (162), Expect = 6e-30
Identities = 590/922 (64%), Gaps = 23/922 (2%)
Strand=Plus/Minus
Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCT--ACAATCTCACAG 155648
||| || || || || || |||||||||| | | || || || ||||| || ||
Sbjct 1207009 AGAGGCAAGGTTGCACACAGCAGTCTCCTCAGGG--GATGAATACTCAACAATTTCGCAA 1206952
Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708
|||| || || ||||||||||| || | |||||||||||| || | ||| ||||
Sbjct 1206951 CACAAATTGGAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCA 1206892
Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768
|||||||| || ||| | ||| | || ||||| |||| || || ||||| |||
Sbjct 1206891 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAA 1206832
Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCC--TTCCGAC----TCATATTTCATA 155822
|| | | || || || || | | ||| |||| | ||||| |||
Sbjct 1206831 AGCTTCTGAGCCTTTATG-----GTACGA-CGGCCCTTTCCAGCCTTTTCATACTTCTCG 1206778
Query 155823 TACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAA 155882
|| || | | || || |||||| ||| || |||||||| | | ||||||
Sbjct 1206777 TAAAGAGCCTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCAC 1206718
Query 155883 AACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAA 155940
| || | |||| || ||| || || |||| ||| || | ||| |||||
Sbjct 1206717 ATAAGTGTCCAATCAGCAT--CCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAA 1206660
Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000
|| |||||| || | ||| ||| || | ||||||||| || || || || |
Sbjct 1206659 GGGCCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGA 1206600
Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060
|| || | ||| ||| ||||| || || || ||||| |||| | ||
Sbjct 1206599 TAAAGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCT 1206540
Query 156061 TG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117
|| ||||| || || || || |||||||| || ||| | |||| | ||| |||| ||
Sbjct 1206539 TGTTCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAA 1206480
Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177
| ||||| || || || || || || |||| || |||| | ||| | ||||| |
Sbjct 1206479 TCCCATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCA 1206420
Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237
| || ||||| ||||| | | || || || | ||||| ||| | ||||| |
Sbjct 1206419 CACTGAGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGT 1206360
Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297
||||||| ||||||||||| || | ||| || || ||||||| || | |||||
Sbjct 1206359 AAATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTGAGGCT 1206300
Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357
||| ||||| || ||| | | || || | || || | || || || || ||||||
Sbjct 1206299 TTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAA 1206240
Query 156358 AATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417
| ||| ||||| | || | | | || ||||||| || ||||| | ||
Sbjct 1206239 GGTTGTAAGTCTCTACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCA 1206180
Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477
| |||||||||||| ||||| || ||||| | | ||| | ||| | ||| |
Sbjct 1206179 TGATCATATGCTGAGGGCGCTCGTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCGCT 1206120
Query 156478 CCAGAGTTTTAAACCCGAAATA 156499
| || ||||| || || |||||
Sbjct 1206119 CTAGCGTTTTGAAACCAAAATA 1206098
>seq3
Length=2072284
Score = 96.9 bits (106), Expect = 1e-14
Identities = 122/166 (73%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 155595 GCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACA 155652
|| ||||| || || |||||||| | || || | || ||||| || || |||||
Sbjct 621730 GCGAGATTGCACACGGCAGTCTCGCTCTC--CGAAGAATACTCTACTATTTCGGTGCACA 621787
Query 155653 GGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCT 155712
| || ||| ||||| ||||||| ||||||||||||||| || || || || ||||| |
Sbjct 621788 GATTTGAAGATTTGATTGTGCCTAGATTCTTCTGGTTAGACTTGCTATTGCAGGCATCTT 621847
Query 155713 TGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758
|||| || | | | || |||||||||| || || | ||| |||||
Sbjct 621848 TGTAAAGCAAGGAAGGATTTCCTGTCTCTATTTGAGAGTCTAGAAT 621893
>seq2
Length=2890200
Score = 84.2 bits (92), Expect = 6e-11
Identities = 194/287 (68%), Gaps = 8/287 (3%)
Strand=Plus/Minus
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
||||| | |||| || || |||||||||| ||| || |||||||||| ||||| ||
Sbjct 440821 GCAAAAAGATCTCGCACTCGCGATGCTCCAACACCCACGAACATTTCTACGAATTCCGAT 440762
Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205
|| || |||| ||| | || ||| ||||| ||| ||| | || | | ||
Sbjct 440761 CCGCTGACA-GAATAGAACGGCACGCCTGCCTCGCCAGCTGTGGCCTTAGCAAACATGGT 440703
Query 289206 CTTACCTGTTCCAGGTGGTCCCTCT---AATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262
|| || ||||||||||| ||| || ||||| | ||| | || | ||| || ||
Sbjct 440702 TTTGCCGGTTCCAGGTGG-CCCGCTTAGAATAG--CGCCCCTGGGAATTTTGGCGCCTAG 440646
Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322
|| || ||| || |||| ||| || |||| |||| ||| || ||| || ||
Sbjct 440645 AGCCTCATACTTGGCAGGCTCCTTCAAGAATTGAACAAACTCCATAATCTCAGCCTTGGC 440586
Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369
||||||| ||||| || || ||||| || || || | ||| ||||
Sbjct 440585 CTCATCAGCCCCTGCGACGTCGGCAAATGTGATTTTGACATCCTTCT 440539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817298277392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |