Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 147 6e-30 seq3 96.9 1e-14 seq2 84.2 6e-11 >seq1 Length=2987201 Score = 147 bits (162), Expect = 6e-30 Identities = 590/922 (64%), Gaps = 23/922 (2%) Strand=Plus/Minus Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCT--ACAATCTCACAG 155648 ||| || || || || || |||||||||| | | || || || ||||| || || Sbjct 1207009 AGAGGCAAGGTTGCACACAGCAGTCTCCTCAGGG--GATGAATACTCAACAATTTCGCAA 1206952 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 |||| || || ||||||||||| || | |||||||||||| || | ||| |||| Sbjct 1206951 CACAAATTGGAGCTCTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCA 1206892 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768 |||||||| || ||| | ||| | || ||||| |||| || || ||||| ||| Sbjct 1206891 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAA 1206832 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCC--TTCCGAC----TCATATTTCATA 155822 || | | || || || || | | ||| |||| | ||||| ||| Sbjct 1206831 AGCTTCTGAGCCTTTATG-----GTACGA-CGGCCCTTTCCAGCCTTTTCATACTTCTCG 1206778 Query 155823 TACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAA 155882 || || | | || || |||||| ||| || |||||||| | | |||||| Sbjct 1206777 TAAAGAGCCTCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCAC 1206718 Query 155883 AACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAA 155940 | || | |||| || ||| || || |||| ||| || | ||| ||||| Sbjct 1206717 ATAAGTGTCCAATCAGCAT--CCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAA 1206660 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 || |||||| || | ||| ||| || | ||||||||| || || || || | Sbjct 1206659 GGGCCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGA 1206600 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060 || || | ||| ||| ||||| || || || ||||| |||| | || Sbjct 1206599 TAAAGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCT 1206540 Query 156061 TG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 || ||||| || || || || |||||||| || ||| | |||| | ||| |||| || Sbjct 1206539 TGTTCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAA 1206480 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 | ||||| || || || || || || |||| || |||| | ||| | ||||| | Sbjct 1206479 TCCCATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCA 1206420 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 | || ||||| ||||| | | || || || | ||||| ||| | ||||| | Sbjct 1206419 CACTGAGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGT 1206360 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 ||||||| ||||||||||| || | ||| || || ||||||| || | ||||| Sbjct 1206359 AAATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCACGAGCTCATCTGAGGCT 1206300 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357 ||| ||||| || ||| | | || || | || || | || || || || |||||| Sbjct 1206299 TTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAA 1206240 Query 156358 AATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417 | ||| ||||| | || | | | || ||||||| || ||||| | || Sbjct 1206239 GGTTGTAAGTCTCTACGACTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCA 1206180 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 | |||||||||||| ||||| || ||||| | | ||| | ||| | ||| | Sbjct 1206179 TGATCATATGCTGAGGGCGCTCGTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCGCT 1206120 Query 156478 CCAGAGTTTTAAACCCGAAATA 156499 | || ||||| || || ||||| Sbjct 1206119 CTAGCGTTTTGAAACCAAAATA 1206098 >seq3 Length=2072284 Score = 96.9 bits (106), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 155595 GCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACA 155652 || ||||| || || |||||||| | || || | || ||||| || || ||||| Sbjct 621730 GCGAGATTGCACACGGCAGTCTCGCTCTC--CGAAGAATACTCTACTATTTCGGTGCACA 621787 Query 155653 GGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCT 155712 | || ||| ||||| ||||||| ||||||||||||||| || || || || ||||| | Sbjct 621788 GATTTGAAGATTTGATTGTGCCTAGATTCTTCTGGTTAGACTTGCTATTGCAGGCATCTT 621847 Query 155713 TGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||| || | | | || |||||||||| || || | ||| ||||| Sbjct 621848 TGTAAAGCAAGGAAGGATTTCCTGTCTCTATTTGAGAGTCTAGAAT 621893 >seq2 Length=2890200 Score = 84.2 bits (92), Expect = 6e-11 Identities = 194/287 (68%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | |||| || || |||||||||| ||| || |||||||||| ||||| || Sbjct 440821 GCAAAAAGATCTCGCACTCGCGATGCTCCAACACCCACGAACATTTCTACGAATTCCGAT 440762 Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 || || |||| ||| | || ||| ||||| ||| ||| | || | | || Sbjct 440761 CCGCTGACA-GAATAGAACGGCACGCCTGCCTCGCCAGCTGTGGCCTTAGCAAACATGGT 440703 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCT---AATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 || || ||||||||||| ||| || ||||| | ||| | || | ||| || || Sbjct 440702 TTTGCCGGTTCCAGGTGG-CCCGCTTAGAATAG--CGCCCCTGGGAATTTTGGCGCCTAG 440646 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 || || ||| || |||| ||| || |||| |||| ||| || ||| || || Sbjct 440645 AGCCTCATACTTGGCAGGCTCCTTCAAGAATTGAACAAACTCCATAATCTCAGCCTTGGC 440586 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 ||||||| ||||| || || ||||| || || || | ||| |||| Sbjct 440585 CTCATCAGCCCCTGCGACGTCGGCAAATGTGATTTTGACATCCTTCT 440539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817298277392