Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 8e-17
seq3 86.0 6e-12
>seq2
Length=2890200
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || ||||||||||||||| | ||| || ||| || ||||| || ||||
Sbjct 724356 GACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCATCAAGCTGCTTGCCGGCG 724415
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||| || || || || ||||| || |||||| | || || ||||
Sbjct 724416 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCGCTGATCTTGCTCTTCACA 724475
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
|| | || || ||| |||||| |||| || | || ||||| ||||| |||||
Sbjct 724476 GCCTCGATGGTGTCACTCGACTCCACCTCGAGGGTAATAGTCTTACCCGTCAGGGTTTTA 724535
Query 132110 ATGAAAATCTGCAT 132123
||||| ||||||||
Sbjct 724536 ATGAAGATCTGCAT 724549
>seq3
Length=2072284
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||| | | ||||| ||||| |||||||||||| | ||||| ||| ||
Sbjct 540857 AACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCGTC 540798
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||| || || | | |||| ||||||||||| || || || || ||||| || || |
Sbjct 540797 AAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCAGA 540738
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
|| || || | || | || ||| | | ||| ||||| | ||| | || ||
Sbjct 540737 GATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTCTT 540678
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || | || || ||||||||||||||
Sbjct 540677 GCCCGTTAACGTCTTGATGAAAATCTGCAT 540648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611104677760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |