Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 206 3e-48 seq2 125 8e-24 >seq1 Length=2987201 Score = 206 bits (228), Expect = 3e-48 Identities = 702/1086 (65%), Gaps = 31/1086 (3%) Strand=Plus/Minus Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753 |||||| | | || || ||| | ||| | ||||| || || || || || | ||| || Sbjct 1207234 GTCGAAAGGAAGGCGCAGCATGAAGAAGGCATCAGCAAGACCTTGGACACCCAGGGCAAT 1207175 Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813 ||||| || ||| |||| || | ||||| |||| ||||||| |||| || ||||| Sbjct 1207174 GGGGCGATGACGCATGTTAGACAGACGAGCCTCAGGAACTGGGTAATAGTTTTTGTCGAT 1207115 Query 80814 GACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA 80873 || | ||||| ||| || |||| ||| ||| ||||| ||| ||||| || Sbjct 1207114 GATGTTGTTCAAGTTCCGAGTAATCACCTTGACAACGCTGTGAAGACTCTTGAAGTCAAA 1207055 Query 80874 TTGGTTCCC--CTTC----------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921 || || |||| | ||| || || ||| | || || || ||||| Sbjct 1207054 CTGTACTCCATCTTCCTGCGTTTTAATAAAAGCAGGGAGGGCTACAGAGGCAAGGTTGCA 1206995 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 ||| || ||| |||| || | |||| || ||||| |||||||| || ||| Sbjct 1206994 CACAGCAGTCTCCTCAGGGGATGAATACTCAACAATTTCGCAACACAAATTGGAGCTCTT 1206935 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 || || || || || |||||||| |||| |||| ||| ||||||||| |||| | Sbjct 1206934 GATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAA 1206875 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 ||| |||| |||||| ||| | || || || |||| ||||| || | ||||| | Sbjct 1206874 GGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAAGCTTCTGAGCCTTTAT 1206815 Query 81102 CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACC 81161 ||| || || | ||||||| ||||| | || || | | || Sbjct 1206814 GGTACGACGGCCCTTTCCAGCCTTTTCATACTTCTCGTAAAGAGCCTCAAATTCATCTCC 1206755 Query 81162 GTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTT 81221 || || |||| ||| | ||||| ||||| |||||||| || ||| || | || Sbjct 1206754 GTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGTCCAATCAGCATCCGC 1206695 Query 81222 CTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCG 81281 | || ||||||||| || || ||||| ||||| |||| || ||||| ||| Sbjct 1206694 TTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAAAAGATCGCGTGCGCG 1206635 Query 81282 CGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCA 81341 ||| || | || || || ||||| |||| |||||| | | || ||||||| Sbjct 1206634 AATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGAACACATCGTCATGCCA 1206575 Query 81342 TGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACG 81398 ||||| || || | ||| | | || || | ||||| |||| ||||||||| Sbjct 1206574 CGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCACCTTGGTCGACGTAACG 1206515 Query 81399 GGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACC 81458 ||||| ||| | ||||||||||| || | || |||| || ||||||||||| Sbjct 1206514 AGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTCGAGGTTCCGTTCGTACC 1206455 Query 81459 CACGATACGCGACCCCTTGGCGCGCACCT--TGCTGATTGAAAGACCGATGCCACCTGAC 81516 | ||| || || | ||||| | | ||| | || || || || ||||| | Sbjct 1206454 AGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTG--AGCCCAATCCCACCGGCA 1206397 Query 81517 CACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTT 81576 |||| || || | || || | |||| || || ||||| ||||| || ||| | Sbjct 1206396 GACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATACCCTCAATAGAATCGTCC 1206337 Query 81577 TTCATGT---CAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGA 81631 ||||||| | || ||| | |||| ||||||||| ||| ||| || |||||| Sbjct 1206336 TTCATGTTTACGAGGAAGCACGAGCT---CATCTGAGG--CTTTGGAGTTCCTGCATTGT 1206282 Query 81632 ACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGA 81691 ||| || || | ||||| |||| || ||| ||||| |||| || || || || Sbjct 1206281 ACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGTAAGTCTCTACGA 1206222 Query 81692 CGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGC 81750 | || || || || || |||||||| || | || ||||| | ||| | ||| |||| Sbjct 1206221 CTTTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATCATATGCTGAGGGC 1206162 Query 81751 GTCTCG 81756 | |||| Sbjct 1206161 G-CTCG 1206157 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||| || || || |||||||| || |||||||| ||||| | Sbjct 2570176 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 2570235 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | | ||||| || || ||| |||||||| || ||||| || ||||| Sbjct 2570236 GACACGATCGAGGCTGTGAAGAGCAAGAT-CAGCGACAAGGAAGGCATTCCGCCTGACCA 2570294 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| ||||| |||| || ||||| | ||||| || Sbjct 2570295 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAA 2570354 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | || ||||| ||||| Sbjct 2570355 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGCCTTCGTGGTGG 2570402 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||||||||||||| || |||||||| || || ||||||||| | ||||||| Sbjct 1207896 GTGCGCAGATAGTACATACCGGTCTTGAGCCCTTTAGACCAGCCGTAGAAGTGCATACTC 1207837 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | ||||| | | ||||||| | ||| ||||||||||| |||| || |||| Sbjct 1207836 GTAAGCTTGCCCATTGTGGGGGATTGCATATAGATGTTCAGACTCTGACTTTGGTCGATG 1207777 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 |||| || | | || ||||| || ||||| |||||| || ||||| ||||| Sbjct 1207776 AAAGGTCCTCTGCCAGCGGCCATATCGATAATCACCTTTTGACTGATCTCCCAAACTGT 1207718 >seq2 Length=2890200 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| | || || || || || ||||||||||| || ||||| ||||| || Sbjct 724549 ATGCAGATCTTCATTAAAACCCTGACGGGTAAGACTATTACCCTCGAGGTGGAGTCGAGT 724490 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | | ||||| || || ||| || |||||||| || || || ||||| Sbjct 724489 GACACCATCGAGGCTGTGAAGAGCAAGAT-CAGCGATAAGGAGGGCATCCCGCCTGACCA 724431 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 724430 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGATGATGGCCGCACCCTTTCCGACTACAA 724371 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || |||||||| | || | ||||| || ||||| Sbjct 724370 CATTCAGAAGGAGTCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 724323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310285937920