Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 102 6e-17 seq1 84.2 1e-11 >seq3 Length=2072284 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | || || | ||||| || || || || || ||||| || || Sbjct 540645 AAGATGCAGATTTTCATCAAGACGTTAACGGGCAAGACCATTACGCTAGAAGTAGAGTCT 540704 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | || || || ||||||| ||||| | || || || Sbjct 540705 AGCGACACCATTGAGGCTGTCAAGAGTAAGATCTCTGACAAGGAAGGAATTCCCCCTGAC 540764 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||| | || ||||| ||||| || || || || | || ||| | ||| ||| Sbjct 540765 CAACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGACGATGGTCGTACTCTTTCCGACTAC 540824 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||||| ||||| |||||||| | ||||| ||| || Sbjct 540825 AACATCCAAAAGGAGTCCACTCTGCATTTGGTTCTA 540860 >seq1 Length=2987201 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||| | || ||||||||||| || || ||||| || || || || || | Sbjct 2570176 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 2570235 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || | || | || ||||| ||||| | ||||| || || Sbjct 2570236 GACACGATCGAGGCTGTGAAGAGCAAGATCAGC-GACAAGGAAGGCATTCCGCCTGACCA 2570294 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | ||||| | || ||||| Sbjct 2570295 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAA 2570354 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 2570355 CATCCAGAAGGAGTCCAC 2570372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009534088128