Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 6e-17
seq1 84.2 1e-11
>seq3
Length=2072284
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||| | || || | ||||| || || || || || ||||| || ||
Sbjct 540645 AAGATGCAGATTTTCATCAAGACGTTAACGGGCAAGACCATTACGCTAGAAGTAGAGTCT 540704
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||| | || || || ||||||| ||||| | || || ||
Sbjct 540705 AGCGACACCATTGAGGCTGTCAAGAGTAAGATCTCTGACAAGGAAGGAATTCCCCCTGAC 540764
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||||||| | || ||||| ||||| || || || || | || ||| | ||| |||
Sbjct 540765 CAACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGACGATGGTCGTACTCTTTCCGACTAC 540824
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
||||| ||||| |||||||| | ||||| ||| ||
Sbjct 540825 AACATCCAAAAGGAGTCCACTCTGCATTTGGTTCTA 540860
>seq1
Length=2987201
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||| | || ||||||||||| || || ||||| || || || || || |
Sbjct 2570176 ATGCAGATCTTCATCAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTCGAGTCTAGC 2570235
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | || | || | || ||||| ||||| | ||||| || ||
Sbjct 2570236 GACACGATCGAGGCTGTGAAGAGCAAGATCAGC-GACAAGGAAGGCATTCCGCCTGACCA 2570294
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| || || || || | ||||| | || |||||
Sbjct 2570295 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGACGATGGCCGCACCCTCTCTGACTACAA 2570354
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 2570355 CATCCAGAAGGAGTCCAC 2570372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009534088128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |