Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01]
16 sequences; 9,561,028 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1 242 5e-59
seq3 87.8 2e-12
>seq1
Length=2987201
Score = 242 bits (268), Expect = 5e-59
Identities = 609/914 (67%), Gaps = 20/914 (2%)
Strand=Plus/Minus
Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972
||| | |||| |||||||||||||| |||| ||| | | ||||||||||| || |||
Sbjct 1206778 GTAAAGAGCC--TCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGG 1206721
Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032
||||| | || ||| ||| |||| | || || || ||||| || ||||| || |||||
Sbjct 1206720 CACATAAGTGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAA 1206661
Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092
|| || || || ||||| || | | | ||||| || || ||| || || |||
Sbjct 1206660 AGGGCCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCG 1206601
Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152
| ||| || | | ||| |||||| || || || || || || | | ||||| ||
Sbjct 1206600 ATAAAGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGC 1206541
Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212
|| || || || || || | || | || ||||| || || || | |||||| |||| |
Sbjct 1206540 TTGTTCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGA 1206481
Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272
|| || || || ||||| || || |||| ||||| ||| | ||||| || |||
Sbjct 1206480 ATCCCATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGC 1206421
Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332
| | ||| || || || || ||| || || || ||||| | |||| ||||||
Sbjct 1206420 ACACTGAGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCG 1206361
Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAG-ACATTTGATG 78391
|| |||||||| ||| || ||| ||||||| | || || || | || ||| ||| |
Sbjct 1206360 TAAATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCA-CGAGCTCATCTGAGG 1206302
Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAG 78451
| |||||||||||| | || || || || || || || || |||| | || |
Sbjct 1206301 CTTTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACAT 1206242
Query 78452 TAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG--ATGAATTCCTACCGCTACA 78509
|| ||||| || || | || ||||| ||| | |||||| || | | ||
Sbjct 1206241 AAGGTTGTAAGTCTCTACGACTTTGGGTATGT--CATCGCCATGAATACCAATGGAGACG 1206184
Query 78510 CGCATCAACATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTAT 78566
||||| | |||||||||||| | || ||| || ||||| ||||| ||||||
Sbjct 1206183 CGCATGATCATATGCTGAGGGCGCTCGTGAAC---TTTTCCATTTAGTTTCAGCAAGTAG 1206127
Query 78567 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATA 78626
|| || | ||||| ||||||||||||||||| ||||| | || |||| ||
Sbjct 1206126 GAGCGCTCTAGCGTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATG 1206067
Query 78627 ACAGAATTTAGTTTATC--TTTGTATTTGGTAACAATATC-CATGACAGTAGTTGAAATA 78683
|||| || || | || || | ||| |||| || || | | | |||||
Sbjct 1206066 GCAGAGTTGAGCTCTTCAGCATGCTTCTGG--ACAACGTCGTATACCTCTTG-GGAAATC 1206010
Query 78684 ATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCA 78743
|| ||||| | |||| |||||| |||||| || | ||| || || || |
Sbjct 1206009 ATTGGAGAATGCTTGTCATTGCGAGGATTCACATAGCGGAAAAGATCCTCAATGACCTGG 1205950
Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803
|| || | ||||||||| | ||||| |||||||| || || |||| |||||| ||
Sbjct 1205949 CTGAACACTTTTTTTGTCTGTTTGTGGAGATTAGACACTGCAATTCGTGCAGCAAGCTGG 1205890
Query 78804 GCATAATCAGGATG 78817
||||| ||||| ||
Sbjct 1205889 GCATAGTCAGGGTG 1205876
Score = 185 bits (204), Expect = 1e-41
Identities = 415/621 (67%), Gaps = 12/621 (2%)
Strand=Plus/Minus
Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199
||| |||||||| || | ||| ||||| | ||| | |||||| || || || ||
Sbjct 897020 ACAGGCAAAATCGGTGTGCATACCCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAG 896961
Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259
|| ||||| || ||||| ||||| ||||| || |||| || || || ||| |||||
Sbjct 896960 CCCAGGCATGAGCCCACGCTTTTTCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAA 896901
Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-----ACTG-GCTTCGTT 48313
| ||||| || || || || || | || | |||| || | ||| || ||| |
Sbjct 896900 GACACCTTCAACAGCAGCGAAGGCAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCT 896841
Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373
| ||||| || ||||||| | ||||||||| | | || || || || ||
Sbjct 896840 G---ATCCAACGAAGTGCCCACTTAGCCTTCTTGCGAATGGAGGGAATGGTGAAGATGGC 896784
Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433
|| || ||||||| || || || ||||| ||||| ||||| || | |||| |||
Sbjct 896783 GTTGAACAGAAAGTCGGCCTCTTTACTGTCTTTCACGTATGTATCAATCAGAAGAGAATA 896724
Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493
| || |||||||| ||||| || ||||| || ||||| |||||| | || || |
Sbjct 896723 AGTCTCAGAGTGAATGTTTTCCATCATAATCTGGAAGCCGTAGAAACATTTGGCCTCGGG 896664
Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553
|| ||||| || ||||| ||| | | ||||||||| || || |||||||||||
Sbjct 896663 AATACCAACCTCACCACTGAATCGCTCAACGAGATTCTCATTGACAATGCCATCACTAGC 896604
Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT---ATT 48610
|||||| || || | ||| | | ||| ||| | |||| |||| || |
Sbjct 896603 AGCAAAGAAAGCAAGAACACGGGACACAAAGTATCTCTCGTCATCGTTCAGCTTGTGCTC 896544
Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
|||||| | | || || || || | ||| || || ||||||||||| ||||| ||
Sbjct 896543 CCAGTCGTGAGTGTCCTTACCTAGGTCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGC 896484
Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730
||| || || | ||| || |||| | ||| ||||| | |||||| | |||||
Sbjct 896483 TTTCTTGTAAGCCTGCCAAATCGAGTTGTACTTGATCGGGAACAAAACAAACCGGTTTGG 896424
Query 48731 ATTTTTTGCAAGGATAGGTTC 48751
||||| |||||| || ||
Sbjct 896423 ATTTTCCTGAAGGATGGGCTC 896403
Score = 105 bits (116), Expect = 9e-18
Identities = 304/465 (65%), Gaps = 11/465 (2%)
Strand=Plus/Minus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| || ||||| || | || |||| || || || |||||||||||||| || || ||
Sbjct 1207926 GTGAATTGAATCGGTGCCGAAGCGGCTTGAGTGCGCAGATAGTACATACCGGTCTTGAGC 1207867
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTG--GAATAACTAGGATCGGCTA 76899
|| | ||| |||||||| ||||| || || || ||| | | |||| | |
Sbjct 1207866 CCTTTAGACCAGCCGTAGAAGTGCATACTCGTAAGCTTGCCCATTGTGGGGGATTG--CA 1207809
Query 76900 TATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTA 76959
||| || |||| ||||||||| |||||||||| |||||| |||| ||||| | |
Sbjct 1207808 TATAGATGTTCAGACTCTGACTTTGGTCGATGAAAGGTCCTCTGCCAGCGGCCATATCGA 1207749
Query 76960 TAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
|||| ||||||| || ||||||| || ||| | | | ||||| ||||| ||||
Sbjct 1207748 TAATCACCTTTTGACTGATCTCCCAAACTGTCTTGTAGAGGTCTTTGAGGTCATCAGGAA 1207689
Query 77020 -----GGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATC 77074
|| ||| || ||| || || ||| | | | ||||| || || ||
Sbjct 1207688 TCGAGGGAATGTCCTT--AATCGAGCCCCCAGAGGCAACGAGACGGTTCTTCATGTCGTC 1207631
Query 77075 ATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTC 77134
||||| | | | || | | | | ||||| |||||| || || || || ||
Sbjct 1207630 GTTCCAAAGGCCCATTTCGACAAGGTCCTTCAAGAGATAAGGATTGACAATCTGGAACTC 1207571
Query 77135 TCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTT 77194
||| | | || | || | ||| | ||| ||| ||||| || | |||||||||
Sbjct 1207570 TCCGGCGAGAACACGGCGCGAGTAGAAATTTGAGGTGTATGGCTCGAAGCATTCATTGTA 1207511
Query 77195 TCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAA 77239
|||||||| |||| || || || || ||||| || || || ||
Sbjct 1207510 GCCCAAAATCTGAGAGGTCGACGCGGTAGGCATCGGAGCAACTAA 1207466
>seq3
Length=2072284
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 78021 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTC 78080
|||||||||||||| ||| |||||| || || | | || || || ||||| |||
Sbjct 622063 TCAGGTATCCATAGCGCATAAAATAGGTCGCGTGCCCGATACTCATCCTTTCCGTGATTT 622122
Query 78081 TTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATA 78140
|| |||||||| | ||| | | |||||| | ||||||||| ||||| | | | ||
Sbjct 622123 TTCTTAAGATCTAAGAACCCAAAAATATCTGCATGCCATGGCTCTAG---TGTCACACTA 622179
Query 78141 A---CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197
| | ||||| | ||| || || |||||||| | ||||| | |||||| | |||
Sbjct 622180 ATTGCACCAGGCCTTTTGTTGCCGCCCTGATCAACGAATCTGCAAGCGTTATTGAATACT 622239
Query 78198 CTCAACATTGGAATAATACC 78217
| ||||| |||| ||| ||
Sbjct 622240 CGTAACATGGGAACAATCCC 622259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668661066240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |