Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 242 5e-59 seq3 87.8 2e-12 >seq1 Length=2987201 Score = 242 bits (268), Expect = 5e-59 Identities = 609/914 (67%), Gaps = 20/914 (2%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||| | |||| |||||||||||||| |||| ||| | | ||||||||||| || ||| Sbjct 1206778 GTAAAGAGCC--TCAAATTCATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGG 1206721 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| | || ||| ||| |||| | || || || ||||| || ||||| || ||||| Sbjct 1206720 CACATAAGTGTCCAATCAGCATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAA 1206661 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 || || || || ||||| || | | | ||||| || || ||| || || ||| Sbjct 1206660 AGGGCCATGAAAAGATCGCGTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCG 1206601 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 | ||| || | | ||| |||||| || || || || || || | | ||||| || Sbjct 1206600 ATAAAGTCGAACACATCGTCATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGC 1206541 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 || || || || || || | || | || ||||| || || || | |||||| |||| | Sbjct 1206540 TTGTTCCCACCTTGGTCGACGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGA 1206481 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 || || || || ||||| || || |||| ||||| ||| | ||||| || ||| Sbjct 1206480 ATCCCATTCGAGGTTCCGTTCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGC 1206421 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 | | ||| || || || || ||| || || || ||||| | |||| |||||| Sbjct 1206420 ACACTGAGCCCAATCCCACCGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCG 1206361 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAG-ACATTTGATG 78391 || |||||||| ||| || ||| ||||||| | || || || | || ||| ||| | Sbjct 1206360 TAAATACCCTCAATAGAATCGTCCTTCATGTTTACGAGGAAGCA-CGAGCTCATCTGAGG 1206302 Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAG 78451 | |||||||||||| | || || || || || || || || |||| | || | Sbjct 1206301 CTTTGGAGTTCCTGCATTGTACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACAT 1206242 Query 78452 TAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG--ATGAATTCCTACCGCTACA 78509 || ||||| || || | || ||||| ||| | |||||| || | | || Sbjct 1206241 AAGGTTGTAAGTCTCTACGACTTTGGGTATGT--CATCGCCATGAATACCAATGGAGACG 1206184 Query 78510 CGCATCAACATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTAT 78566 ||||| | |||||||||||| | || ||| || ||||| ||||| |||||| Sbjct 1206183 CGCATGATCATATGCTGAGGGCGCTCGTGAAC---TTTTCCATTTAGTTTCAGCAAGTAG 1206127 Query 78567 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATA 78626 || || | ||||| ||||||||||||||||| ||||| | || |||| || Sbjct 1206126 GAGCGCTCTAGCGTTTTGAAACCAAAATAGTTGTAATTGAAGTCACGATCATAAACGATG 1206067 Query 78627 ACAGAATTTAGTTTATC--TTTGTATTTGGTAACAATATC-CATGACAGTAGTTGAAATA 78683 |||| || || | || || | ||| |||| || || | | | ||||| Sbjct 1206066 GCAGAGTTGAGCTCTTCAGCATGCTTCTGG--ACAACGTCGTATACCTCTTG-GGAAATC 1206010 Query 78684 ATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCA 78743 || ||||| | |||| |||||| |||||| || | ||| || || || | Sbjct 1206009 ATTGGAGAATGCTTGTCATTGCGAGGATTCACATAGCGGAAAAGATCCTCAATGACCTGG 1205950 Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 || || | ||||||||| | ||||| |||||||| || || |||| |||||| || Sbjct 1205949 CTGAACACTTTTTTTGTCTGTTTGTGGAGATTAGACACTGCAATTCGTGCAGCAAGCTGG 1205890 Query 78804 GCATAATCAGGATG 78817 ||||| ||||| || Sbjct 1205889 GCATAGTCAGGGTG 1205876 Score = 185 bits (204), Expect = 1e-41 Identities = 415/621 (67%), Gaps = 12/621 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| |||||||| || | ||| ||||| | ||| | |||||| || || || || Sbjct 897020 ACAGGCAAAATCGGTGTGCATACCCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAG 896961 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || ||||| ||||| ||||| || |||| || || || ||| ||||| Sbjct 896960 CCCAGGCATGAGCCCACGCTTTTTCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAA 896901 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-----ACTG-GCTTCGTT 48313 | ||||| || || || || || | || | |||| || | ||| || ||| | Sbjct 896900 GACACCTTCAACAGCAGCGAAGGCAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCT 896841 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||| || ||||||| | ||||||||| | | || || || || || Sbjct 896840 G---ATCCAACGAAGTGCCCACTTAGCCTTCTTGCGAATGGAGGGAATGGTGAAGATGGC 896784 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 || || ||||||| || || || ||||| ||||| ||||| || | |||| ||| Sbjct 896783 GTTGAACAGAAAGTCGGCCTCTTTACTGTCTTTCACGTATGTATCAATCAGAAGAGAATA 896724 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 | || |||||||| ||||| || ||||| || ||||| |||||| | || || | Sbjct 896723 AGTCTCAGAGTGAATGTTTTCCATCATAATCTGGAAGCCGTAGAAACATTTGGCCTCGGG 896664 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 || ||||| || ||||| ||| | | ||||||||| || || ||||||||||| Sbjct 896663 AATACCAACCTCACCACTGAATCGCTCAACGAGATTCTCATTGACAATGCCATCACTAGC 896604 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT---ATT 48610 |||||| || || | ||| | | ||| ||| | |||| |||| || | Sbjct 896603 AGCAAAGAAAGCAAGAACACGGGACACAAAGTATCTCTCGTCATCGTTCAGCTTGTGCTC 896544 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| | | || || || || | ||| || || ||||||||||| ||||| || Sbjct 896543 CCAGTCGTGAGTGTCCTTACCTAGGTCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGC 896484 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 ||| || || | ||| || |||| | ||| ||||| | |||||| | ||||| Sbjct 896483 TTTCTTGTAAGCCTGCCAAATCGAGTTGTACTTGATCGGGAACAAAACAAACCGGTTTGG 896424 Query 48731 ATTTTTTGCAAGGATAGGTTC 48751 ||||| |||||| || || Sbjct 896423 ATTTTCCTGAAGGATGGGCTC 896403 Score = 105 bits (116), Expect = 9e-18 Identities = 304/465 (65%), Gaps = 11/465 (2%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || || ||||| || | || |||| || || || |||||||||||||| || || || Sbjct 1207926 GTGAATTGAATCGGTGCCGAAGCGGCTTGAGTGCGCAGATAGTACATACCGGTCTTGAGC 1207867 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTG--GAATAACTAGGATCGGCTA 76899 || | ||| |||||||| ||||| || || || ||| | | |||| | | Sbjct 1207866 CCTTTAGACCAGCCGTAGAAGTGCATACTCGTAAGCTTGCCCATTGTGGGGGATTG--CA 1207809 Query 76900 TATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTA 76959 ||| || |||| ||||||||| |||||||||| |||||| |||| ||||| | | Sbjct 1207808 TATAGATGTTCAGACTCTGACTTTGGTCGATGAAAGGTCCTCTGCCAGCGGCCATATCGA 1207749 Query 76960 TAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 |||| ||||||| || ||||||| || ||| | | | ||||| ||||| |||| Sbjct 1207748 TAATCACCTTTTGACTGATCTCCCAAACTGTCTTGTAGAGGTCTTTGAGGTCATCAGGAA 1207689 Query 77020 -----GGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATC 77074 || ||| || ||| || || ||| | | | ||||| || || || Sbjct 1207688 TCGAGGGAATGTCCTT--AATCGAGCCCCCAGAGGCAACGAGACGGTTCTTCATGTCGTC 1207631 Query 77075 ATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTC 77134 ||||| | | | || | | | | ||||| |||||| || || || || || Sbjct 1207630 GTTCCAAAGGCCCATTTCGACAAGGTCCTTCAAGAGATAAGGATTGACAATCTGGAACTC 1207571 Query 77135 TCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTT 77194 ||| | | || | || | ||| | ||| ||| ||||| || | ||||||||| Sbjct 1207570 TCCGGCGAGAACACGGCGCGAGTAGAAATTTGAGGTGTATGGCTCGAAGCATTCATTGTA 1207511 Query 77195 TCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAA 77239 |||||||| |||| || || || || ||||| || || || || Sbjct 1207510 GCCCAAAATCTGAGAGGTCGACGCGGTAGGCATCGGAGCAACTAA 1207466 >seq3 Length=2072284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 78021 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTC 78080 |||||||||||||| ||| |||||| || || | | || || || ||||| ||| Sbjct 622063 TCAGGTATCCATAGCGCATAAAATAGGTCGCGTGCCCGATACTCATCCTTTCCGTGATTT 622122 Query 78081 TTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATA 78140 || |||||||| | ||| | | |||||| | ||||||||| ||||| | | | || Sbjct 622123 TTCTTAAGATCTAAGAACCCAAAAATATCTGCATGCCATGGCTCTAG---TGTCACACTA 622179 Query 78141 A---CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | ||||| | ||| || || |||||||| | ||||| | |||||| | ||| Sbjct 622180 ATTGCACCAGGCCTTTTGTTGCCGCCCTGATCAACGAATCTGCAAGCGTTATTGAATACT 622239 Query 78198 CTCAACATTGGAATAATACC 78217 | ||||| |||| ||| || Sbjct 622240 CGTAACATGGGAACAATCCC 622259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668661066240