Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 241 2e-58 seq3 100 4e-16 >seq1 Length=2987201 Score = 241 bits (266), Expect = 2e-58 Identities = 705/1070 (66%), Gaps = 16/1070 (1%) Strand=Plus/Minus Query 76351 CTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAAC 76410 |||||| ||||||||||| | ||||||||||| ||| | ||||| || || | Sbjct 1206937 CTTGATGGTTCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCAT 1206878 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTT 76469 || || | ||||| || |||| | || | ||||| | ||| | | ||| ||| | Sbjct 1206877 GAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAATAGCGTACCAAA-GCTTCTGAGCCT 1206819 Query 76470 TTATTATA-GATTTGTATCGCTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATT 76526 |||| || || | | || ||||||| || | ||| | | || ||||||| Sbjct 1206818 TTATGGTACGACGGCCCTTTCCAGCCT-TTTCATACTTCTCGTAAAGAGCC--TCAAATT 1206762 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 ||||||| |||| ||| | | ||||| ||||| || || ||||| | || ||| ||| Sbjct 1206761 CATCTCCGTAAACGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATAAGTGTCCAATCAG 1206702 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||| | || || || ||||| || ||||| || ||||| || || || || ||||| | Sbjct 1206701 CATCCGCTTTGACGCGCTTCATGAACAGATCGGGAATCCAAAGGGCCATGAAAAGATCGC 1206642 Query 76647 GGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAG 76706 | | | | ||||| || || ||| || || || | || || | | ||| Sbjct 1206641 GTGCGCGAATCTCTTCCTTGCCGTGATTTTTGCGCAGGTCGATAAAGTCGAACACATCGT 1206582 Query 76707 AATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTA 76766 |||||| || || || || || || | |||| || || || || || || || || | Sbjct 1206581 CATGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTCCCACCTTGGTCGA 1206522 Query 76767 TATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCAT 76826 || | |||||||| || || || | |||||| |||| ||| || || || || || | Sbjct 1206521 CGTAACGAGCAGTGTTGTTGTACACACGCAACATGGGAAGAATCCCATTCGAGGTTCCGT 1206462 Query 76827 TTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTC 76886 | || |||| ||||| ||| || || || ||| | | || || || || | Sbjct 1206461 TCGTACCAGCTATATATGAGCCAGTAGCGCGGATGTTATGCACACTGAGCCCAATCCCAC 1206402 Query 76887 CTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTAT 76946 | || || ||||| || || |||| |||| || || || || ||||| ||| || Sbjct 1206401 CGGCAGACTTCGAGATGAGCGCGCAGCTCTTCAGAGTATCGTAAATACCCTCAATAGAAT 1206342 Query 76947 CATCCATCATGTTAAGAAGAAAACAGCTAG-ACATTTGATGATGAACAGTTCCTGCATTA 77005 | ||| ||||||| | || || || | || ||| ||| | | |||||||||||| Sbjct 1206341 CGTCCTTCATGTTTACGAGGAAGCA-CGAGCTCATCTGAGGCTTTGGAGTTCCTGCATTG 1206283 Query 77006 AACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATA 77065 |||| || || || || || ||||| |||| | || | || ||||| || || | Sbjct 1206282 TACAAGGTGGGCGAGGCGTGGGTGAAGTATTTGTTGGACATAAGGTTGTAAGTCTCTACG 1206223 Query 77066 ACTGCTTCTATATCCCATTG--ATGAATTCCTACAGCGACACGCATCAACATATGCTGAG 77123 ||| || ||| ||| | |||||| || | | ||| ||||| | ||||||||||| Sbjct 1206222 ACT--TTGGGTATGTCATCGCCATGAATACCAATGGAGACGCGCATGATCATATGCTGAG 1206165 Query 77124 GTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAAC 77183 | || || | || ||||| ||||| |||||| || || | ||||| |||| Sbjct 1206164 GGCGCTCGTGAACTTTTCCATTTAGTTTCAGCAAGTAGGAGCGCTCTAGCGTTTTGAAAC 1206105 Query 77184 CAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTAT 77243 ||||||||||||| ||||| | || |||| || | || || || | || || Sbjct 1206104 CAAAATAGTTGTAATTGAAGTCACGATCATAAACGATGGCAGAGTTGAGCTCTTCAGCAT 1206045 Query 77244 ATTTGGTAACAATATC-CATGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTA 77302 || |||| || || | | | ||||| |||||||| | | |||| | Sbjct 1206044 GCTTCTGGACAACGTCGTATACCTCTTG-GGAAATCATTGGAGAATGCTTGTCATTGCGA 1205986 Query 77303 GGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTG 77362 ||||| |||||| || | || || || || | ||| || | ||||||||| | ||| Sbjct 1205985 GGATTCACATAGCGGAAAAGATCCTCAATGACCTGGCTGAACACTTTTTTTGTCTGTTTG 1205926 Query 77363 TGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 || ||||| || || || |||| ||||| || ||||||||||| || Sbjct 1205925 TGGAGATTAGACACTGCAATTCGTGCAGCAAGCTGGGCATAGTCAGGGTG 1205876 Score = 168 bits (186), Expect = 1e-36 Identities = 402/606 (66%), Gaps = 14/606 (2%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| |||||||| || | || ||||| | ||| | |||||| || || || || Sbjct 897020 ACAGGCAAAATCGGTGTGCATACCCTCATCGCGCGAAATCAGTTCGTTGGAGAAAGTAAG 896961 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||||||||| || ||||||||||| ||||| || || | || || || ||| ||||| Sbjct 896960 CCCAGGCATGAGCCCACGCTTTTTCAGCCAGAAGATTGATGCAAACGAGCCACTGAAGAA 896901 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA-- 46806 | ||||| ||||| ||||| || | || | |||| || | | | ||| | Sbjct 896900 GACACCTTCAACAGCAGCGAAGGCAATTAGGCGCTCTGCGAAGGTAGACTCAGCGTCGCT 896841 Query 46807 -ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| | | ||||| | |||||| || | | || || || || || || Sbjct 896840 GATCCAACGAAGTGCCCACTTAGCCTTCTTGCGAATGGAGGGAATGGTGAAGATGGCGTT 896781 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 || ||||||| || | ||| ||||| || |||||||| || | |||| ||| | Sbjct 896780 GAACAGAAAGTCGGCCTCTTTACTGTCTTTCACGTATGTATCAATCAGAAGAGAATAAGT 896721 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 || || ||||||||||| || ||||| || ||||| |||||| | || || | ||| Sbjct 896720 CTCAGAGTGAATGTTTTCCATCATAATCTGGAAGCCGTAGAAACATTTGGCCTCGGGAAT 896661 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 ||||| || ||||| ||| | ||||||||| || || |||||||||||||| Sbjct 896660 ACCAACCTCACCACTGAATCGCTCAACGAGATTCTCATTGACAATGCCATCACTAGCAGC 896601 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT---ATTCCA 47102 ||| || || | ||| | | ||| ||| | || || |||| || | ||| Sbjct 896600 AAAGAAAGCAAGAACACGGGACACAAAGTATCTCTCGTCATCGTTCAGCTTGTGCTCCCA 896541 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 ||| | | || || || || | ||| || || ||||| ||||||||||| ||||| Sbjct 896540 GTCGTGAGTGTCCTTACCTAGGTCAATTTCCTCGGCCGTCCAAAATGACGCCTCGGCTTT 896481 Query 47163 TTTATACATATTCCATATATCACGA----TATTGGATCGGAAAAATAACAAATCTATTTG 47218 || || | ||| || ||| || | |||||| || | |||||| | |||| Sbjct 896480 CTTGTAAGCCTGCCAAAT----CGAGTTGTACTTGATCGGGAACAAAACAAACCGGTTTG 896425 Query 47219 GATTTT 47224 |||||| Sbjct 896424 GATTTT 896419 Score = 107 bits (118), Expect = 3e-18 Identities = 309/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| ||||| ||||| || | || || | || || || |||||||||||||| || | Sbjct 1207931 CAACAGTGAATTGAATCGGTGCCGAAGCGGCTTGAGTGCGCAGATAGTACATACCGGTCT 1207872 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTG--GAATAACTCGGATC 75489 | || || | ||| |||||||| ||||| || || || ||| | | |||| Sbjct 1207871 TGAGCCCTTTAGACCAGCCGTAGAAGTGCATACTCGTAAGCTTGCCCATTGTGGGGGATT 1207812 Query 75490 GGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCAT 75549 | |||| || |||| ||||||||| |||||||||| |||||| |||| ||||| Sbjct 1207811 G--CATATAGATGTTCAGACTCTGACTTTGGTCGATGAAAGGTCCTCTGCCAGCGGCCAT 1207754 Query 75550 TTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATC 75609 | ||||| ||||||| || ||||||| || ||| | | | ||||| ||||| Sbjct 1207753 ATCGATAATCACCTTTTGACTGATCTCCCAAACTGTCTTGTAGAGGTCTTTGAGGTCATC 1207694 Query 75610 TGGAA--GATTTGTATTT--TGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCT 75665 |||| || | || | | ||| || || ||| | | | ||||| || | Sbjct 1207693 AGGAATCGA-GGGAATGTCCTTAATCGAGCCCCCAGAGGCAACGAGACGGTTCTTCATGT 1207635 Query 75666 CATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAA 75725 | || ||||| | | ||| | | | | ||||| |||||| ||||| || | Sbjct 1207634 CGTCGTTCCAAAGGCCCATTTCGACAAGGTCCTTCAAGAGATAAGGATTGACAATCTGGA 1207575 Query 75726 ATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCAT 75785 | ||||| | | || | || | ||| | ||| ||| ||||| || | |||||| Sbjct 1207574 ACTCTCCGGCGAGAACACGGCGCGAGTAGAAATTTGAGGTGTATGGCTCGAAGCATTCAT 1207515 Query 75786 TGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 ||| |||||||| |||| || || || || ||||| || || || || Sbjct 1207514 TGTAGCCCAAAATCTGAGAGGTCGACGCGGTAGGCATCGGAGCAACTAA 1207466 >seq3 Length=2072284 Score = 100 bits (110), Expect = 4e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 76616 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTC 76675 |||||||||||||| ||| |||||| || || | | | || || ||||| ||| Sbjct 622063 TCAGGTATCCATAGCGCATAAAATAGGTCGCGTGCCCGATACTCATCCTTTCCGTGATTT 622122 Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 || |||||||||| |||| | | |||||| | ||||||||| ||||| | || | || Sbjct 622123 TTCTTAAGATCTAAGAACCCAAAAATATCTGCATGCCATGGCTCTAG---TGTCACACTA 622179 Query 76736 A---CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | |||| || | ||| || || |||||||| | ||||| || |||||| | ||| Sbjct 622180 ATTGCACCAGGCCTTTTGTTGCCGCCCTGATCAACGAATCTGCAAGCGTTATTGAATACT 622239 Query 76793 CTCAACATTGGAATAATGCC 76812 | ||||| |||| ||| || Sbjct 622240 CGTAACATGGGAACAATCCC 622259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934257413120