Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Starmerella_20bombicola_20[genbank_20GCA_5F001599315.1_202016-03-01] 16 sequences; 9,561,028 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 109 1e-18 seq2 105 2e-17 seq1 96.9 8e-15 >seq3 Length=2072284 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| ||||| |||||||||||||| |||| | ||| | ||||| Sbjct 540859 AGAACCAAATGCAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCG 540800 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||| ||||| | | ||||||||||| || Sbjct 540799 TCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGGGGAATTCCTTCCTTGTCA 540740 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||||| ||| | | |||| | ||||||||| || ||||| || Sbjct 540739 GAGATCTTACTCTTGACAGCCTCAATGGTGTCGCTAGACTCTACTTCTAGCGTAATGGTC 540680 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||| | ||||| | ||| | |||||| || Sbjct 540679 TTGCCCGTTAACGTCTTGATGAAAATCTGCATCTT 540645 >seq2 Length=2890200 Score = 105 bits (116), Expect = 2e-17 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||||||||| || || |||||||| |||| | || | Sbjct 724331 GAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCG 724390 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||||||||| || | ||||||||| | || ||| || || Sbjct 724391 GCCATCATCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTC 724450 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 ||| || || || || |||| ||| | | |||| ||| ||| || || || Sbjct 724451 CTTATCGCTGATCTTGCTCTTCACAGCCTCGATGGTGTC---ACTCGACTCCACCTCGAG 724507 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 |||||||| || ||||| || || || | ||||| |||||| |||| Sbjct 724508 GGTAATAGTCTTACCCGTCAGGGTTTTAATGAAGATCTGCATCGTACC 724555 >seq1 Length=2987201 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| || | | || | ||||| || | Sbjct 2570382 CAAG-TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCGTCGA 2570324 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | ||||||||| | || || |||||||| || | Sbjct 2570323 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCGCTGA 2570264 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || |||| ||| | |||| | ||| || ||||| || ||||| || | Sbjct 2570263 TCTTGCTCTTCACAGCCTCGATCGTGTCGCTAGACTCGACCTCAAGGGTGATAGTCTTCC 2570204 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| ||||| | ||||| |||||| Sbjct 2570203 CCGTGAGGGTCTTGATGAAGATCTGCAT 2570176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820563466736